Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 PABPC1P9-201ENST00000426076 1612 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AL359893.1-201ENST00000447628 1580 ntBASIC3.55□□□□□ -1.84
MSH3P20585 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
MSH3P20585 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
MSH3P20585 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 SNORD116-4-201ENST00000384733 96 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 FNDC3CP-201ENST00000420795 1155 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC012065.2-201ENST00000421295 375 ntBASIC3.54□□□□□ -1.84
MSH3P20585 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 AL353706.1-201ENST00000436728 494 ntBASIC3.54□□□□□ -1.84
MSH3P20585 MUPP-201ENST00000438111 566 ntBASIC3.54□□□□□ -1.84
MSH3P20585 LSM1P1-201ENST00000438629 273 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC127537.2-201ENST00000439258 465 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL831737.1-201ENST00000441288 271 ntBASIC3.54□□□□□ -1.84
MSH3P20585 COX6CP12-201ENST00000446748 202 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 AC005297.2-201ENST00000450430 606 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC004801.2-202ENST00000463559 283 ntBASIC3.54□□□□□ -1.84
MSH3P20585 RN7SL330P-201ENST00000469709 307 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.54□□□□□ -1.84
MSH3P20585 AC092451.1-201ENST00000480211 153 ntBASIC3.54□□□□□ -1.84
MSH3P20585 RPS3AP50-201ENST00000487064 803 ntBASIC3.54□□□□□ -1.84
MSH3P20585 FAM172BP-201ENST00000487497 1089 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 MTND5P4-201ENST00000514978 288 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 COX6CP8-201ENST00000522620 226 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC022861.1-201ENST00000522981 663 ntBASIC3.54□□□□□ -1.84
MSH3P20585 OR5AP1P-201ENST00000529730 940 ntBASIC3.54□□□□□ -1.84
MSH3P20585 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.54□□□□□ -1.84
MSH3P20585 RSL24D1P11-201ENST00000591045 491 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC025588.3-201ENST00000604182 274 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL009028.1-201ENST00000604895 802 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC012557.2-201ENST00000605919 418 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AC097468.3-201ENST00000607956 456 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL592295.2-201ENST00000612578 206 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL357080.1-201ENST00000617394 239 ntBASIC3.54□□□□□ -1.84
MSH3P20585 AL445264.1-201ENST00000621719 171 ntBASIC3.54□□□□□ -1.84
MSH3P20585 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
MSH3P20585 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.54□□□□□ -1.84
MSH3P20585 AL356473.1-201ENST00000406203 1408 ntBASIC3.53□□□□□ -1.84
MSH3P20585 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSH3P20585 AL133383.2-201ENST00000622958 2336 ntBASIC3.53□□□□□ -1.84
MSH3P20585 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
MSH3P20585 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSH3P20585 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSH3P20585 Y_RNA.194-201ENST00000363985 102 ntBASIC3.53□□□□□ -1.84
MSH3P20585 RNU6-289P-201ENST00000364093 107 ntBASIC3.53□□□□□ -1.84
MSH3P20585 RNA5SP42-201ENST00000364278 115 ntBASIC3.53□□□□□ -1.84
MSH3P20585 RNU6-343P-201ENST00000364709 104 ntBASIC3.53□□□□□ -1.84
MSH3P20585 SNORD82-201ENST00000365530 70 ntBASIC3.53□□□□□ -1.84
MSH3P20585 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
MSH3P20585 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AL031679.1-201ENST00000400616 525 ntBASIC3.53□□□□□ -1.84
MSH3P20585 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 MIR320C1-201ENST00000408566 88 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.53□□□□□ -1.84
MSH3P20585 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 OFD1P18Y-201ENST00000420889 959 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 HSPD1P21-201ENST00000436541 245 ntBASIC3.53□□□□□ -1.84
MSH3P20585 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH3P20585 HSPE1P28-201ENST00000443139 211 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.53□□□□□ -1.84
MSH3P20585 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 AC023598.1-201ENST00000472521 361 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AC106707.2-201ENST00000484182 374 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.53□□□□□ -1.84
MSH3P20585 POU5F1P7-201ENST00000508759 541 ntBASIC3.53□□□□□ -1.84
MSH3P20585 AC023141.12-201ENST00000512399 199 ntBASIC3.53□□□□□ -1.84
MSH3P20585 ARL2BPP6-201ENST00000512757 439 ntBASIC3.53□□□□□ -1.84
MSH3P20585 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.53□□□□□ -1.84
MSH3P20585 RNU2-27P-201ENST00000516185 142 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms