Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
HMGA1P17096 AP005901.5-201ENST00000545779 1796 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 SNORA17.3-201ENST00000391159 129 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 AL627390.1-201ENST00000396055 340 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 HMGB3P2-201ENST00000411913 584 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.88□□□□□ -2.11
HMGA1P17096 UBBP3-201ENST00000445497 241 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HMGA1P17096 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HMGA1P17096 AC068714.1-201ENST00000559623 800 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HMGA1P17096 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 MIR8081-201ENST00000611533 95 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 FO624990.1-201ENST00000636373 85 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 AP000553.5-201ENST00000641933 54 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC1.88□□□□□ -2.11
HMGA1P17096 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
HMGA1P17096 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
HMGA1P17096 MTND4P1-201ENST00000457501 1466 ntBASIC1.88□□□□□ -2.11
HMGA1P17096 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HMGA1P17096 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HMGA1P17096 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
HMGA1P17096 MTND1P23-201ENST00000416931 372 ntBASIC1.87□□□□□ -2.11
HMGA1P17096 RPL30P3-201ENST00000424262 333 ntBASIC1.87□□□□□ -2.11
HMGA1P17096 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC1.87□□□□□ -2.11
HMGA1P17096 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.87□□□□□ -2.11
HMGA1P17096 USP9YP15-201ENST00000442391 422 ntBASIC1.87□□□□□ -2.11
HMGA1P17096 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC1.87□□□□□ -2.11
HMGA1P17096 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.87□□□□□ -2.11
HMGA1P17096 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.87□□□□□ -2.11
HMGA1P17096 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HMGA1P17096 MIR4255-201ENST00000579351 72 ntBASIC1.87□□□□□ -2.11
HMGA1P17096 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.87□□□□□ -2.11
HMGA1P17096 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC1.87□□□□□ -2.11
HMGA1P17096 AK6-205ENST00000618980 483 ntTSL 2 BASIC1.87□□□□□ -2.11
HMGA1P17096 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
HMGA1P17096 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
HMGA1P17096 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.86□□□□□ -2.11
HMGA1P17096 MTCO1P9-201ENST00000505577 1534 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.86□□□□□ -2.11
HMGA1P17096 OR4G2P-202ENST00000641004 1759 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HMGA1P17096 SNORA16.1-201ENST00000364597 132 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 RNA5SP190-201ENST00000365222 118 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 AL513331.1-201ENST00000411908 397 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.86□□□□□ -2.11
HMGA1P17096 ELOCP6-201ENST00000429066 328 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 MRPS33P4-201ENST00000434892 317 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.86□□□□□ -2.11
HMGA1P17096 ELOCP12-201ENST00000458706 328 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 RPL21P104-201ENST00000464143 478 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 HMGN2P13-201ENST00000476476 274 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC1.86□□□□□ -2.11
HMGA1P17096 SNORA25.15-201ENST00000516487 89 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.86□□□□□ -2.11
HMGA1P17096 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC1.86□□□□□ -2.11
HMGA1P17096 AC104115.2-201ENST00000523026 687 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.86□□□□□ -2.11
HMGA1P17096 TRAV11-201ENST00000539512 339 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.86□□□□□ -2.11
HMGA1P17096 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC1.86□□□□□ -2.11
HMGA1P17096 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.86□□□□□ -2.11
HMGA1P17096 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.86□□□□□ -2.11
HMGA1P17096 RPL23AP78-201ENST00000599928 470 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 AC091953.2-201ENST00000623979 160 ntBASIC1.86□□□□□ -2.11
HMGA1P17096 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HMGA1P17096 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.86□□□□□ -2.11
HMGA1P17096 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
HMGA1P17096 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HMGA1P17096 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
HMGA1P17096 RNA5SP138-201ENST00000365098 114 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 SUMO2P12-201ENST00000405924 140 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 RPL17P12-201ENST00000413391 526 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 RPL23AP39-201ENST00000415533 405 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.85□□□□□ -2.11
HMGA1P17096 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC1.85□□□□□ -2.11
HMGA1P17096 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.85□□□□□ -2.11
HMGA1P17096 RPL7P12-201ENST00000446719 750 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 SSXP4-201ENST00000451349 245 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.85□□□□□ -2.11
HMGA1P17096 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.85□□□□□ -2.11
HMGA1P17096 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.85□□□□□ -2.11
HMGA1P17096 AC090453.1-201ENST00000495560 436 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 RNA5SP458-201ENST00000516188 119 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 SNORD59.2-201ENST00000516873 68 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.85□□□□□ -2.11
HMGA1P17096 AC125611.2-201ENST00000551907 647 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 MIR5194-201ENST00000582634 120 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 AP000942.3-201ENST00000603702 160 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 AL391813.2-201ENST00000609113 322 ntBASIC1.85□□□□□ -2.11
HMGA1P17096 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC1.85□□□□□ -2.11
HMGA1P17096 RNA5SP393-201ENST00000363423 117 ntBASIC1.84□□□□□ -2.11
HMGA1P17096 SNORD56.5-201ENST00000364281 72 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms