Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AP000942.4-201ENST00000604811 241 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC009159.1-201ENST00000618386 642 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC138649.3-201ENST00000622154 254 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL3A1P02461 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 CASC19-280ENST00000642102 1351 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC007496.3-201ENST00000624987 3443 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC015813.6-201ENST00000624409 5808 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL3A1P02461 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL3A1P02461 MIR30E-201ENST00000362104 92 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 RNU5F-7P-201ENST00000363696 115 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 SNORA4.1-201ENST00000364263 144 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 Y_RNA.372-201ENST00000365599 102 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 RPS20P15-201ENST00000412792 311 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL3A1P02461 MTND4LP10-201ENST00000435146 291 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 RFC5P1-201ENST00000454419 874 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 PNPLA4P1-201ENST00000458328 305 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC107398.1-201ENST00000486904 505 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 AP000859.1-201ENST00000525536 307 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 OR5AK3P-201ENST00000527486 1297 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC123904.3-201ENST00000547218 814 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 NCAPGP2-201ENST00000557911 754 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC091834.1-201ENST00000614543 472 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AL158209.2-201ENST00000619266 216 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 FRG1KP-201ENST00000623592 341 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC009033.1-201ENST00000624279 431 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 SEC63P2-201ENST00000503863 1939 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL3A1P02461 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.42□□□□□ -1.7
COL3A1P02461 MTCO1P23-201ENST00000415223 1526 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL3A1P02461 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL3A1P02461 AL356489.2-201ENST00000566968 3528 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL3A1P02461 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
COL3A1P02461 Z83843.1-201ENST00000604070 3685 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 METTL21EP-201ENST00000298105 713 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 Y_RNA.38-201ENST00000362617 102 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.42□□□□□ -1.7
COL3A1P02461 BTF3L4P3-201ENST00000418879 476 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 AC073614.1-201ENST00000438690 650 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 MTND5P14-201ENST00000441481 1267 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 AC008264.1-201ENST00000447612 367 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 OR6C5P-201ENST00000452388 923 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 VPS26AP1-201ENST00000483197 979 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.42□□□□□ -1.7
COL3A1P02461 AC024224.1-201ENST00000538284 609 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 OR7K1P-201ENST00000546439 926 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.42□□□□□ -1.7
COL3A1P02461 MIR2682-201ENST00000580305 110 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 VN1R79P-201ENST00000593540 513 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.42□□□□□ -1.7
COL3A1P02461 AP001836.1-201ENST00000604675 523 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 AC023158.2-201ENST00000614876 543 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.42□□□□□ -1.7
COL3A1P02461 FAM157B-203ENST00000639350 358 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL3A1P02461 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL3A1P02461 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL3A1P02461 AC092111.2-201ENST00000611627 1414 ntBASIC4.42□□□□□ -1.7
COL3A1P02461 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
COL3A1P02461 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL3A1P02461 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
COL3A1P02461 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL3A1P02461 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL3A1P02461 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
COL3A1P02461 SNORA54-201ENST00000384281 123 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 Y_RNA.573-201ENST00000384763 105 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 MIR525-201ENST00000384978 85 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC010385.1-201ENST00000412374 256 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 EEF1A1P40-201ENST00000412883 573 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 HMGB3P23-201ENST00000414981 585 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 LINC01347-201ENST00000417964 355 ntBASIC4.41□□□□□ -1.7
COL3A1P02461 AC009237.2-201ENST00000421358 284 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms