Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC021205.2-201ENST00000480069 347 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC021146.8-201ENST00000507455 733 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 RN7SKP265-201ENST00000516448 223 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 RN7SKP60-201ENST00000516985 239 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 CR383656.7-201ENST00000548164 174 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC005476.1-201ENST00000554427 397 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 FAM60BP-201ENST00000578364 658 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 VN1R78P-201ENST00000597393 564 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC245297.2-201ENST00000610119 565 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 XIST_intron.1-201ENST00000619444 68 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AP002782.1-201ENST00000623107 614 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 AC138915.3-201ENST00000562908 1389 ntBASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
ATG4BQ9Y4P1 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RNU1-33P-201ENST00000364249 162 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RNU6-83P-201ENST00000384568 112 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 BX323014.1-201ENST00000412876 237 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AL008987.1-201ENST00000415528 237 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 HSFY4P-201ENST00000415994 1181 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 HMGB1P49-201ENST00000418882 569 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 HMGN2P20-201ENST00000437531 273 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC008155.2-201ENST00000464337 397 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RPS4XP10-201ENST00000465034 731 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC023424.2-201ENST00000493479 777 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC093663.1-201ENST00000497190 394 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC074250.1-201ENST00000511117 192 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RNU6-150P-201ENST00000516237 95 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 MTCO2P15-201ENST00000532655 656 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 MIR4474-201ENST00000579189 78 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC234772.3-201ENST00000602277 528 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AL391001.1-201ENST00000602747 715 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AL031176.1-201ENST00000604554 466 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 CRYM-AS1-204ENST00000637983 556 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 AC006927.4-201ENST00000639187 543 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 TAB3P1-202ENST00000452645 1634 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 CR383658.2-201ENST00000547576 1525 ntBASIC3.18□□□□□ -1.9
ATG4BQ9Y4P1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AC017071.1-201ENST00000564407 2204 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AC058791.1-201ENST00000608412 3198 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 DDX43P2-201ENST00000604753 1354 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 FAM133CP-201ENST00000332869 704 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AP002088.1-201ENST00000382740 395 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 RNVU1-14-201ENST00000384770 164 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AL031679.1-201ENST00000400616 525 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 RNU6-757P-201ENST00000410334 100 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 USP9YP33-201ENST00000412220 421 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 TPMTP2-201ENST00000414372 726 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 USP9YP35-201ENST00000435696 412 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.17□□□□□ -1.9
ATG4BQ9Y4P1 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms