Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNA5SP56-201ENST00000410277 118 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RNU2-15P-201ENST00000410692 191 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AL359704.1-201ENST00000411586 781 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RPS12P23-201ENST00000419579 400 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 MTCYBP5-201ENST00000423752 1135 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC005517.2-201ENST00000424673 553 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC108734.1-201ENST00000439549 399 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AL049734.2-201ENST00000441066 616 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RPL7P52-201ENST00000449200 742 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC003071.1-201ENST00000451219 789 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 FGF7P6-202ENST00000451282 293 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 FABP3P2-201ENST00000453169 399 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC104308.1-201ENST00000454621 333 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RPS20P24-201ENST00000457473 361 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 snoU13.24-201ENST00000458998 104 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 COX7A2P2-201ENST00000505291 250 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 MTCO1P24-201ENST00000515438 1558 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 MIR2114-201ENST00000516645 80 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC022616.6-201ENST00000520479 119 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AP003181.2-201ENST00000528941 181 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 NRBF2P1-201ENST00000587407 859 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AL009028.1-201ENST00000604895 802 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC004853.1-201ENST00000604902 698 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RBM11P1-201ENST00000604951 799 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AL355472.4-201ENST00000610233 626 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 uc_338.32-201ENST00000615087 172 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AL021997.2-201ENST00000615674 271 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC012150.2-201ENST00000621300 544 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC138649.3-201ENST00000622154 254 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RNA5SP387-201ENST00000364226 106 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RNU6ATAC-201ENST00000408749 126 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RN7SKP159-201ENST00000410657 292 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 MTND3P17-201ENST00000416968 344 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AL139095.3-201ENST00000419672 1203 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RPL23AP83-201ENST00000434984 473 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 MTCO2P3-201ENST00000442543 421 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 DHFRP3-201ENST00000455595 559 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 snoU13.8-201ENST00000458890 104 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 HMGB1P25-201ENST00000468402 607 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 MTND1P3-201ENST00000484956 952 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC017037.1-201ENST00000508460 471 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 RNU6-27P-201ENST00000516146 107 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 Y_RNA.672-201ENST00000516289 104 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 OR8L1P-201ENST00000534005 955 ntBASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
VPS4AQ9UN37 AC006960.3-201ENST00000561845 705 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms