Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 FRG1BP-201ENST00000278882 761 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 RNU1-75P-201ENST00000347264 129 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 FRG1CP-201ENST00000358464 769 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 SNORD9-201ENST00000362566 104 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 RNA5SP51-201ENST00000364750 119 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 SNORD116-8-201ENST00000384365 95 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 MIR135A2-201ENST00000384854 100 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 DBIP2-201ENST00000419076 262 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 BEND7P1-201ENST00000422058 457 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 RPL31P12-201ENST00000422587 358 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AL445669.1-201ENST00000426743 755 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 VDAC1P3-201ENST00000434069 851 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AL359073.1-201ENST00000448036 403 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC104308.1-201ENST00000454621 333 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 SNORD121B-201ENST00000458838 81 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 snoU13.4-201ENST00000458916 104 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 UBE2CP3-201ENST00000502715 450 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 SNORA70.18-201ENST00000516696 98 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AP003497.1-201ENST00000528472 562 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 HSPE1P5-201ENST00000561489 272 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC011260.1-201ENST00000578420 472 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 MIR3690-201ENST00000580266 75 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC067852.3-201ENST00000589177 561 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AL109653.1-201ENST00000603091 248 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 MTCYBP22-201ENST00000603788 447 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC011451.2-201ENST00000604303 598 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC106028.5-201ENST00000610332 395 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC006927.3-201ENST00000638789 384 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 CR383658.2-201ENST00000547576 1525 ntBASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LIMA1Q9UHB6 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 SNORD6-201ENST00000365444 73 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 RNU6-769P-201ENST00000384407 104 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 RNU6-628P-201ENST00000410675 107 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 RPS7P13-201ENST00000413955 498 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 SSXP9-201ENST00000417503 292 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 DUTP6-201ENST00000425573 462 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 CDC27P1-201ENST00000445384 715 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 ZNF114P1-201ENST00000453500 292 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 OR6K1P-201ENST00000456766 971 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 RNU7-170P-201ENST00000459303 61 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 VN1R17P-201ENST00000472048 1090 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 BET1P1-201ENST00000482276 359 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AL024509.2-201ENST00000493462 493 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC021678.1-201ENST00000505195 936 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 KLHL2P1-201ENST00000508691 521 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC034268.2-201ENST00000571784 482 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 MIR5685-201ENST00000579080 79 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC008088.1-201ENST00000580993 280 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC008507.1-201ENST00000587506 734 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms