Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 AC110994.2-201ENST00000635481 492 ntBASIC4.33□□□□□ -1.72
DKK3Q9UBP4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 AC105074.1-201ENST00000623380 3095 ntBASIC4.33□□□□□ -1.72
DKK3Q9UBP4 AC130650.2-201ENST00000618736 2403 ntBASIC4.33□□□□□ -1.72
DKK3Q9UBP4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
DKK3Q9UBP4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL049780.3-201ENST00000624612 1583 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 SAGE4P-201ENST00000442271 3381 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 MIR383-201ENST00000362257 73 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RNA5SP391-201ENST00000363456 119 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RNU6-343P-201ENST00000364709 104 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RNY4P34-201ENST00000364779 95 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 Y_RNA.402-201ENST00000383972 102 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 SNORA70C-201ENST00000384538 135 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL583835.1-201ENST00000399570 407 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RN7SKP235-201ENST00000410662 305 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RNU4-55P-201ENST00000410731 137 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 MIR1911-201ENST00000410783 80 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 CCDC58P2-201ENST00000417131 366 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 ZNF863P-201ENST00000426746 417 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL451074.3-201ENST00000437709 472 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RPL22P17-201ENST00000438729 315 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL138799.3-201ENST00000438968 350 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 HSPE1P28-201ENST00000443139 211 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RPS4XP4-201ENST00000443195 763 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 NUTF2P3-201ENST00000448540 384 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC079448.1-201ENST00000449377 373 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 RPL23AP62-201ENST00000463396 453 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC092989.1-201ENST00000481235 277 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 MTND1P3-201ENST00000484956 952 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC034222.1-201ENST00000494052 532 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC114967.1-201ENST00000504890 259 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC009646.1-201ENST00000510455 318 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC010493.1-201ENST00000513479 292 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 Y_RNA.672-201ENST00000516289 104 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 CYCSP29-201ENST00000533731 318 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL157687.1-201ENST00000554853 619 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 CENPUP2-201ENST00000555897 1186 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 HMGB1P33-201ENST00000563485 527 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 BBIP1P1-201ENST00000602999 279 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AP000907.4-201ENST00000604143 237 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 LARP7P1-201ENST00000605576 316 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC103710.3-201ENST00000608157 948 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC069234.5-201ENST00000611056 416 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 MIR8059-201ENST00000620427 81 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 CYP3A51P-201ENST00000633513 256 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AL672167.1-203ENST00000641299 2975 ntBASIC4.32□□□□□ -1.72
DKK3Q9UBP4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.32□□□□□ -1.72
DKK3Q9UBP4 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
DKK3Q9UBP4 GNG5P1-201ENST00000255500 204 ntBASIC4.31□□□□□ -1.72
DKK3Q9UBP4 Y_RNA.46-201ENST00000362695 102 ntBASIC4.31□□□□□ -1.72
DKK3Q9UBP4 SNORD6-201ENST00000365444 73 ntBASIC4.31□□□□□ -1.72
DKK3Q9UBP4 RPS3AP36-201ENST00000398190 775 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms