Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AC008264.1-201ENST00000447612 367 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 MTND2P14-201ENST00000482139 351 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 RPS3AP50-201ENST00000487064 803 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AC114981.1-201ENST00000503897 678 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 OR4P1P-201ENST00000530808 1136 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AP003385.6-201ENST00000531603 374 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 ZNF321P-202ENST00000550843 495 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 LARP7P2-201ENST00000575306 125 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 PRELID3BP8-201ENST00000604148 295 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 RNA5SP108-201ENST00000605921 117 ntBASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
ZNF541Q9H0D2 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
ZNF541Q9H0D2 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.84□□□□□ -1.8
ZNF541Q9H0D2 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 RNU6-253P-201ENST00000384730 105 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 RN7SKP220-201ENST00000410611 288 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AMD1P2-201ENST00000412936 992 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 GLRXP1-201ENST00000423261 334 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 MTND5P25-201ENST00000430499 799 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 MTND1P32-201ENST00000433043 938 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 MTND2P19-201ENST00000449129 1012 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 HMGN2P7-201ENST00000456186 273 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 RPS15AP17-201ENST00000470598 390 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 MRPS36P3-201ENST00000519284 130 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 RPL23AP92-201ENST00000603609 255 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AL607023.1-201ENST00000620045 248 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC099506.2-201ENST00000623074 221 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AC103706.2-201ENST00000638080 240 ntBASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ZNF541Q9H0D2 AL672296.1-201ENST00000427780 2158 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 MTCO1P23-201ENST00000415223 1526 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC062016.1-201ENST00000355719 319 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 RNU6-878P-201ENST00000384578 110 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 RPL31P1-201ENST00000398116 372 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL445529.1-201ENST00000398713 389 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC126124.2-201ENST00000413542 321 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 HSPE1P28-201ENST00000443139 211 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC026410.2-201ENST00000460281 156 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC106872.2-201ENST00000494303 480 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 MTCYBP35-201ENST00000503630 1137 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC104090.1-201ENST00000506341 1171 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 RNU6-150P-201ENST00000516237 95 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 SNORA70.19-201ENST00000516717 90 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC022861.1-201ENST00000522981 663 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 KC877982.1-201ENST00000602313 470 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 uc_338.25-201ENST00000613756 156 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 uc_338.32-201ENST00000615087 172 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 AC079228.1-201ENST00000624774 1049 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms