Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC087272.1-201ENST00000523624 533 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.78□□□□□ -1.96
CDX2Q99626 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.78□□□□□ -1.96
CDX2Q99626 AP003717.3-201ENST00000544832 1180 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 OR4H12P-201ENST00000556269 907 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.78□□□□□ -1.96
CDX2Q99626 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.78□□□□□ -1.96
CDX2Q99626 HMGN2P28-201ENST00000606102 262 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 AP004247.3-201ENST00000608682 624 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.78□□□□□ -1.96
CDX2Q99626 AL356094.1-201ENST00000624663 1212 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 AC092435.3-201ENST00000565538 3654 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.78□□□□□ -1.96
CDX2Q99626 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.78□□□□□ -1.96
CDX2Q99626 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
CDX2Q99626 AC110774.1-201ENST00000623567 2018 ntBASIC2.78□□□□□ -1.96
CDX2Q99626 ELL2P4-201ENST00000446870 1376 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CDX2Q99626 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CDX2Q99626 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
CDX2Q99626 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
CDX2Q99626 MIR518C-201ENST00000384822 101 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 SNORD65C-201ENST00000390962 71 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 BX664727.1-201ENST00000416024 466 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 RPS3AP9-201ENST00000417027 792 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC008173.1-201ENST00000418901 264 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 MTCYBP24-201ENST00000420387 1106 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX2Q99626 RPL36P19-201ENST00000430744 301 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 RPL17P35-201ENST00000432217 549 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 VDAC1P3-201ENST00000434069 851 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX2Q99626 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.77□□□□□ -1.97
CDX2Q99626 RPS26P56-201ENST00000444468 240 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 RPL7P55-201ENST00000450522 746 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 HMGB1P15-201ENST00000453854 435 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 NF1P3-201ENST00000457709 450 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 RPL23AP42-201ENST00000471152 471 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.77□□□□□ -1.97
CDX2Q99626 AC006483.1-201ENST00000487308 313 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 RN7SL633P-201ENST00000488974 297 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 SRIP1-201ENST00000489235 288 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 OR4G11P-201ENST00000492842 939 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX2Q99626 RNU6-202P-201ENST00000515998 96 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 SCARNA17.1-201ENST00000516211 143 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 SCARNA17.2-201ENST00000516334 143 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 HIGD1AP6-201ENST00000521833 279 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.77□□□□□ -1.97
CDX2Q99626 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CDX2Q99626 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.77□□□□□ -1.97
CDX2Q99626 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.77□□□□□ -1.97
CDX2Q99626 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.77□□□□□ -1.97
CDX2Q99626 AC090616.5-202ENST00000582111 297 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC023043.2-201ENST00000589678 1026 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC005776.1-201ENST00000603164 290 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AL133393.1-201ENST00000603277 287 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC009570.1-201ENST00000609599 745 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 SCARNA17.4-201ENST00000614296 143 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC004696.1-201ENST00000614345 607 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 AC132825.7-201ENST00000638744 335 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CDX2Q99626 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
CDX2Q99626 PABPC1P7-201ENST00000413177 1513 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.77□□□□□ -1.97
CDX2Q99626 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.77□□□□□ -1.97
CDX2Q99626 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CDX2Q99626 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.76□□□□□ -1.97
CDX2Q99626 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX2Q99626 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
CDX2Q99626 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX2Q99626 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CDX2Q99626 RPL22P22-201ENST00000395439 379 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 EIF5P1-201ENST00000400019 1231 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 SKINT1L-201ENST00000401057 817 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.76□□□□□ -1.97
CDX2Q99626 RPL32P35-201ENST00000415214 394 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 AC005517.2-201ENST00000424673 553 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 OR51AB1P-201ENST00000429046 620 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CDX2Q99626 ISCA1P2-201ENST00000438679 421 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 AL158053.1-201ENST00000441503 453 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 HSFY3P-201ENST00000444242 1191 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 HMGB3P6-201ENST00000444896 598 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX2Q99626 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.76□□□□□ -1.97
CDX2Q99626 HMGN1P18-201ENST00000457642 277 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 RPL32P14-201ENST00000463196 378 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 OR5H3P-201ENST00000502817 919 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.76□□□□□ -1.97
CDX2Q99626 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX2Q99626 RNA5SP217-201ENST00000515959 91 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 AP003168.1-201ENST00000530091 307 ntBASIC2.76□□□□□ -1.97
CDX2Q99626 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX2Q99626 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
CDX2Q99626 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX2Q99626 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.76□□□□□ -1.97
CDX2Q99626 SNRPGP15-201ENST00000600149 222 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms