Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC138853.1-201ENST00000503549 823 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC139783.2-201ENST00000504847 1145 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC4.64□□□□□ -1.67
NUP88Q99567 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.64□□□□□ -1.67
NUP88Q99567 RNU6-798P-201ENST00000516912 103 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 RNU6-528P-201ENST00000516926 100 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.64□□□□□ -1.67
NUP88Q99567 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.64□□□□□ -1.67
NUP88Q99567 YPEL5P3-201ENST00000547227 352 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC123904.2-201ENST00000548059 300 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.64□□□□□ -1.67
NUP88Q99567 AC090616.5-202ENST00000582111 297 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP88Q99567 HMGN1P30-201ENST00000589286 268 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP88Q99567 CKS1BP3-201ENST00000600888 237 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC012669.1-201ENST00000603209 283 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 RNU6-87P-201ENST00000607561 108 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC109347.2-201ENST00000610220 349 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AL121772.2-201ENST00000614331 297 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP88Q99567 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP88Q99567 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.64□□□□□ -1.67
NUP88Q99567 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
NUP88Q99567 AC009902.3-201ENST00000606235 2172 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
NUP88Q99567 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.64□□□□□ -1.67
NUP88Q99567 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
NUP88Q99567 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP88Q99567 MTND5P33-201ENST00000571250 1450 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.63□□□□□ -1.67
NUP88Q99567 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.63□□□□□ -1.67
NUP88Q99567 GNG5P1-201ENST00000255500 204 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 Y_RNA.548-201ENST00000384656 105 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AL583834.1-201ENST00000406943 343 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 RNA5SP306-201ENST00000411087 107 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP88Q99567 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.63□□□□□ -1.67
NUP88Q99567 OR4K11P-201ENST00000431829 904 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.63□□□□□ -1.67
NUP88Q99567 SNORD121B-201ENST00000458838 81 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.63□□□□□ -1.67
NUP88Q99567 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.63□□□□□ -1.67
NUP88Q99567 PPIAP15-201ENST00000479662 484 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.63□□□□□ -1.67
NUP88Q99567 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.63□□□□□ -1.67
NUP88Q99567 RNU6-201P-201ENST00000517100 61 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AP003033.1-201ENST00000527244 415 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.63□□□□□ -1.67
NUP88Q99567 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.63□□□□□ -1.67
NUP88Q99567 AC007599.1-201ENST00000568688 1174 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 MIR3913-1-201ENST00000577744 102 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP88Q99567 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.63□□□□□ -1.67
NUP88Q99567 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.63□□□□□ -1.67
NUP88Q99567 SNORD84-203ENST00000584275 78 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC090578.1-201ENST00000604955 591 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC233309.1-201ENST00000619522 751 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC099654.13-201ENST00000639774 207 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.63□□□□□ -1.67
NUP88Q99567 MTND4P5-201ENST00000435821 1374 ntBASIC4.63□□□□□ -1.67
NUP88Q99567 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
NUP88Q99567 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
NUP88Q99567 MTND5P29-201ENST00000458676 1807 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NUP88Q99567 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
NUP88Q99567 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.62□□□□□ -1.67
NUP88Q99567 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NUP88Q99567 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
NUP88Q99567 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.62□□□□□ -1.67
NUP88Q99567 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
NUP88Q99567 RNU5A-6P-201ENST00000384136 116 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 Y_RNA.505-201ENST00000384489 102 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 RNU2-66P-201ENST00000410650 161 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 RNU6-248P-201ENST00000410720 107 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AC233728.2-201ENST00000425348 757 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AL353777.1-201ENST00000425552 326 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 RWDD4P2-201ENST00000426392 563 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.62□□□□□ -1.67
NUP88Q99567 AC104651.1-201ENST00000427559 735 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 ISCA1P6-201ENST00000427740 390 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.62□□□□□ -1.67
NUP88Q99567 AC007389.2-201ENST00000434630 306 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AL451050.1-201ENST00000450126 415 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.62□□□□□ -1.67
NUP88Q99567 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.62□□□□□ -1.67
NUP88Q99567 RN7SL323P-201ENST00000494712 295 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.62□□□□□ -1.67
NUP88Q99567 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NUP88Q99567 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.62□□□□□ -1.67
NUP88Q99567 Y_RNA.672-201ENST00000516289 104 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AP003181.2-201ENST00000528941 181 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.62□□□□□ -1.67
NUP88Q99567 AC091516.1-201ENST00000549191 703 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.62□□□□□ -1.67
NUP88Q99567 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms