Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNA5SP143-201ENST00000516936 115 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-1092P-201ENST00000516955 87 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 OR5D17P-201ENST00000531492 978 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 MED28P6-201ENST00000558776 231 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AL589674.2-201ENST00000604304 337 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AP001330.5-201ENST00000607176 411 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 MIR6837-201ENST00000620884 64 ntBASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC28AQ8IWP9 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RNA5SP388-201ENST00000362584 119 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.409-201ENST00000383990 98 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-74P-201ENST00000384235 107 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 MIR1-2-201ENST00000384961 85 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC009804.1-201ENST00000400949 179 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPS4XP8-201ENST00000402039 771 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RNU2-39P-201ENST00000410604 198 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPL7L1P10-201ENST00000427790 463 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPL12P11-201ENST00000439970 501 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPS4XP4-201ENST00000443195 763 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 SNRPGP5-201ENST00000456003 220 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPL7L1P8-201ENST00000469911 741 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC092451.1-201ENST00000480211 153 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPL7P51-201ENST00000490532 749 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RNA5SP446-201ENST00000515955 82 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 SNORA31.8-201ENST00000516327 108 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.693-201ENST00000516641 110 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AP001922.4-201ENST00000526967 290 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 OR5AQ1P-201ENST00000527596 927 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 HMGB1P6-201ENST00000569046 646 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPL23AP84-201ENST00000571193 464 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 RPL12P25-202ENST00000598100 674 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC025449.1-201ENST00000603896 529 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 AC135068.12-201ENST00000637370 931 ntBASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC28AQ8IWP9 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL137003.2-201ENST00000606924 2538 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC010733.2-201ENST00000589496 5702 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RN7SKP160-201ENST00000363804 340 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RNA5SP335-201ENST00000363817 110 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RN7SKP113-201ENST00000363891 295 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RNA5SP435-201ENST00000364044 108 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-960P-201ENST00000364056 120 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-641P-201ENST00000384006 107 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.450-201ENST00000384198 113 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 SNORA67-201ENST00000384423 137 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL353193.1-201ENST00000421444 268 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC093655.2-201ENST00000425735 631 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 RPL36AP6-201ENST00000435770 321 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AL512326.1-201ENST00000443050 721 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 SPRYD7P1-201ENST00000443861 570 ntBASIC3.84□□□□□ -1.79
CCDC28AQ8IWP9 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms