Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL7A1Q02388 SNORA7.1-201ENST00000363750 139 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 SNORA48.3-201ENST00000391081 134 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 MIR548J-201ENST00000408833 112 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.35□□□□□ -2.19
COL7A1Q02388 AL357520.1-201ENST00000441557 453 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.35□□□□□ -2.19
COL7A1Q02388 RPL21P18-201ENST00000469899 480 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC1.35□□□□□ -2.19
COL7A1Q02388 CBX3P4-201ENST00000538909 354 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.35□□□□□ -2.19
COL7A1Q02388 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.35□□□□□ -2.19
COL7A1Q02388 MIR6132-201ENST00000622083 109 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.35□□□□□ -2.19
COL7A1Q02388 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
COL7A1Q02388 AC103988.1-201ENST00000566382 2177 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 RPL7P37-201ENST00000425095 738 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.35□□□□□ -2.19
COL7A1Q02388 RPS29P12-201ENST00000460178 152 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 AC091544.1-201ENST00000484702 348 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 AP001804.3-201ENST00000525146 880 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC1.35□□□□□ -2.19
COL7A1Q02388 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.35□□□□□ -2.19
COL7A1Q02388 AC092447.7-201ENST00000422212 1621 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
COL7A1Q02388 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
COL7A1Q02388 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.34□□□□□ -2.19
COL7A1Q02388 AC009237.8-201ENST00000445492 379 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 MTND3P6-201ENST00000485242 339 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 AC093767.1-201ENST00000504523 156 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC1.34□□□□□ -2.19
COL7A1Q02388 AL161670.1-201ENST00000554348 137 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 OR4G1P-201ENST00000588632 938 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 AC012119.1-201ENST00000603184 222 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 AL137072.1-201ENST00000603444 466 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 AL627309.6-201ENST00000606857 840 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.34□□□□□ -2.19
COL7A1Q02388 VN1R7P-201ENST00000619242 903 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.34□□□□□ -2.19
COL7A1Q02388 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.34□□□□□ -2.19
COL7A1Q02388 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC1.34□□□□□ -2.19
COL7A1Q02388 AC009501.3-201ENST00000605001 1352 ntBASIC1.34□□□□□ -2.19
COL7A1Q02388 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
COL7A1Q02388 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
COL7A1Q02388 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.34□□□□□ -2.19
COL7A1Q02388 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
COL7A1Q02388 AL391987.6-201ENST00000305671 199 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 MIR625-201ENST00000385047 85 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 AL035405.1-201ENST00000400795 710 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 AL138799.3-201ENST00000438968 350 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 PIGFP3-201ENST00000441918 722 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 ATP5EP1-201ENST00000510257 156 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.34□□□□□ -2.2
COL7A1Q02388 PTP4A1P6-201ENST00000531034 478 ntBASIC1.34□□□□□ -2.2
COL7A1Q02388 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.34□□□□□ -2.2
COL7A1Q02388 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.34□□□□□ -2.2
COL7A1Q02388 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC1.34□□□□□ -2.2
COL7A1Q02388 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.34□□□□□ -2.2
COL7A1Q02388 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.34□□□□□ -2.2
COL7A1Q02388 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
COL7A1Q02388 SET-203ENST00000372688 801 ntTSL 2 BASIC1.33□□□□□ -2.2
COL7A1Q02388 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
COL7A1Q02388 NCSTNP1-201ENST00000406229 144 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 RNA5SP385-201ENST00000515947 110 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC1.33□□□□□ -2.2
COL7A1Q02388 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC092326.2-201ENST00000624772 1561 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
COL7A1Q02388 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC027124.2-201ENST00000428249 105 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 UBE2V1P6-201ENST00000430840 422 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.33□□□□□ -2.2
COL7A1Q02388 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC087441.2-201ENST00000529141 262 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 TPMTP1-201ENST00000592307 737 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC131902.3-201ENST00000611767 581 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
COL7A1Q02388 AC245100.2-201ENST00000454544 1679 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.33□□□□□ -2.2
COL7A1Q02388 SEPT7P7-201ENST00000420492 1301 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.33□□□□□ -2.2
COL7A1Q02388 SNORD21-201ENST00000383953 95 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AC013404.1-201ENST00000413068 249 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AC108734.3-201ENST00000481241 1165 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 RPL23AP44-201ENST00000482216 473 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.33□□□□□ -2.2
COL7A1Q02388 OR4P1P-201ENST00000530808 1136 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.33□□□□□ -2.2
COL7A1Q02388 AL035411.2-201ENST00000604022 421 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AC019159.1-201ENST00000605094 187 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 Y_RNA.783-201ENST00000613546 102 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 AL353748.2-201ENST00000622148 471 ntBASIC1.33□□□□□ -2.2
COL7A1Q02388 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
COL7A1Q02388 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
COL7A1Q02388 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
COL7A1Q02388 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
COL7A1Q02388 Y_RNA.68-201ENST00000362881 102 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms