Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FCF1P1-201ENST00000432690 571 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA1P55317 HMGB1P38-201ENST00000490557 577 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA1P55317 AC112518.2-201ENST00000508565 425 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA1P55317 AC121161.1-201ENST00000510606 652 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 MTND2P31-201ENST00000512602 616 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA1P55317 PRELID3BP4-201ENST00000515476 571 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 RNU6-1073P-201ENST00000517182 106 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AP003467.2-201ENST00000520175 319 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.35□□□□□ -2.03
FOXA1P55317 AC124293.1-201ENST00000530034 493 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.35□□□□□ -2.03
FOXA1P55317 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.35□□□□□ -2.03
FOXA1P55317 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.35□□□□□ -2.03
FOXA1P55317 AL020997.3-201ENST00000602843 359 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AP004247.3-201ENST00000608682 624 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AL390240.1-201ENST00000612950 384 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 VN1R7P-201ENST00000619242 903 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA1P55317 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA1P55317 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA1P55317 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA1P55317 AP001350.1-201ENST00000601906 1524 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 ANKRD36P1-201ENST00000344424 659 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 SNORA5B-201ENST00000363786 132 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 RNU6-374P-201ENST00000364146 108 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 SNORA41-201ENST00000384675 132 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 SSXP10-201ENST00000402595 565 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 RPL19P1-201ENST00000411635 428 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 USP9YP19-201ENST00000412165 485 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 BX664727.1-201ENST00000416024 466 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC246680.2-201ENST00000422106 389 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 RPP40P1-201ENST00000426762 456 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC114973.1-201ENST00000429057 632 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA1P55317 GXYLT1P1-201ENST00000446657 490 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA1P55317 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA1P55317 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA1P55317 RPL23AP45-201ENST00000476406 468 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 RNF138P1-201ENST00000502765 546 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA1P55317 AC112673.1-201ENST00000513168 575 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 MTND5P4-201ENST00000514978 288 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 RNA5SP402-201ENST00000517148 110 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 AC025881.1-201ENST00000518851 512 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 HMGB1P1-201ENST00000522557 636 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AP004371.1-201ENST00000525240 214 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA1P55317 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA1P55317 AC011611.5-201ENST00000552477 578 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC027807.1-201ENST00000559921 996 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AADACP1-206ENST00000561502 1193 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 HMGB1P6-201ENST00000569046 646 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 RPL23AP84-201ENST00000571193 464 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 MIR4319-201ENST00000577285 85 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA1P55317 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA1P55317 AC133794.1-201ENST00000602731 914 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 DUXAP4-201ENST00000603046 613 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC098483.2-201ENST00000603158 454 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC005776.1-201ENST00000603164 290 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AL035413.2-201ENST00000604801 525 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC026741.1-201ENST00000605892 482 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC104237.2-201ENST00000612456 443 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AL512506.1-201ENST00000613918 449 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC073592.7-201ENST00000623659 507 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC097372.4-201ENST00000625025 466 ntBASIC2.34□□□□□ -2.03
FOXA1P55317 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA1P55317 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA1P55317 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA1P55317 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA1P55317 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA1P55317 AC062016.1-201ENST00000355719 319 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 RNU6-609P-201ENST00000365459 107 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
FOXA1P55317 RNU6-441P-201ENST00000384545 106 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 MT-TC-201ENST00000387405 66 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
FOXA1P55317 AP002784.2-201ENST00000397300 549 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 UBE2V1P2-201ENST00000397758 440 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 UBE2V1P9-201ENST00000414760 368 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 TOMM22P1-201ENST00000418578 312 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AC009237.2-201ENST00000421358 284 ntBASIC2.33□□□□□ -2.04
FOXA1P55317 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA1P55317 MTATP6P11-201ENST00000428071 670 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms