Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PABPC1P7-201ENST00000413177 1513 ntBASIC3.56□□□□□ -1.84
MSH3P20585 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSH3P20585 AL022578.1-201ENST00000439330 1433 ntBASIC3.56□□□□□ -1.84
MSH3P20585 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSH3P20585 MTND4P16-201ENST00000466108 1367 ntBASIC3.56□□□□□ -1.84
MSH3P20585 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.56□□□□□ -1.84
MSH3P20585 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSH3P20585 SNORD9-201ENST00000362566 104 ntBASIC3.56□□□□□ -1.84
MSH3P20585 RNU6-501P-201ENST00000364072 100 ntBASIC3.56□□□□□ -1.84
MSH3P20585 RNU6-777P-201ENST00000364265 104 ntBASIC3.56□□□□□ -1.84
MSH3P20585 RNU6-730P-201ENST00000383954 104 ntBASIC3.56□□□□□ -1.84
MSH3P20585 HMGB1P11-201ENST00000413899 637 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AL035410.1-201ENST00000427409 427 ntBASIC3.56□□□□□ -1.84
MSH3P20585 MTCO3P5-201ENST00000433620 714 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AL138799.3-201ENST00000438968 350 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AP000936.2-201ENST00000447151 681 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.56□□□□□ -1.84
MSH3P20585 AC078817.1-201ENST00000492623 435 ntBASIC3.56□□□□□ -1.84
MSH3P20585 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 AC093809.1-201ENST00000509155 340 ntBASIC3.56□□□□□ -1.84
MSH3P20585 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.56□□□□□ -1.84
MSH3P20585 AC091965.2-201ENST00000512324 613 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.56□□□□□ -1.84
MSH3P20585 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.56□□□□□ -1.84
MSH3P20585 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
MSH3P20585 Y_RNA.655-201ENST00000515919 96 ntBASIC3.56□□□□□ -1.84
MSH3P20585 RNU6-579P-201ENST00000516879 102 ntBASIC3.56□□□□□ -1.84
MSH3P20585 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.56□□□□□ -1.84
MSH3P20585 OR6C7P-201ENST00000547875 934 ntBASIC3.56□□□□□ -1.84
MSH3P20585 PCMTD1P2-201ENST00000565017 355 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.56□□□□□ -1.84
MSH3P20585 MIR5186-201ENST00000577504 120 ntBASIC3.56□□□□□ -1.84
MSH3P20585 OR4G1P-201ENST00000588632 938 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.56□□□□□ -1.84
MSH3P20585 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 AC119751.7-201ENST00000600494 245 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AL513477.2-201ENST00000607858 568 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AC012360.2-201ENST00000609349 391 ntBASIC3.56□□□□□ -1.84
MSH3P20585 AC008121.2-201ENST00000614647 523 ntBASIC3.56□□□□□ -1.84
MSH3P20585 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
MSH3P20585 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSH3P20585 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSH3P20585 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.56□□□□□ -1.84
MSH3P20585 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.55□□□□□ -1.84
MSH3P20585 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 AC007656.2-201ENST00000624902 4547 ntBASIC3.55□□□□□ -1.84
MSH3P20585 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 RNU6-623P-201ENST00000363143 105 ntBASIC3.55□□□□□ -1.84
MSH3P20585 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 Y_RNA.553-201ENST00000384670 102 ntBASIC3.55□□□□□ -1.84
MSH3P20585 RPL31P1-201ENST00000398116 372 ntBASIC3.55□□□□□ -1.84
MSH3P20585 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH3P20585 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.55□□□□□ -1.84
MSH3P20585 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH3P20585 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 ARF4P2-201ENST00000430209 526 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AL365184.2-201ENST00000431139 435 ntBASIC3.55□□□□□ -1.84
MSH3P20585 GOT2P5-201ENST00000433995 546 ntBASIC3.55□□□□□ -1.84
MSH3P20585 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH3P20585 BMI1P1-201ENST00000445879 941 ntBASIC3.55□□□□□ -1.84
MSH3P20585 Z95327.1-201ENST00000446082 482 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH3P20585 RPS20P32-201ENST00000456044 356 ntBASIC3.55□□□□□ -1.84
MSH3P20585 SNORA84-201ENST00000459229 133 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH3P20585 AC010424.1-201ENST00000506336 297 ntBASIC3.55□□□□□ -1.84
MSH3P20585 MTND4P2-201ENST00000507767 1203 ntBASIC3.55□□□□□ -1.84
MSH3P20585 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.55□□□□□ -1.84
MSH3P20585 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.55□□□□□ -1.84
MSH3P20585 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 AC006116.10-201ENST00000591836 581 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.55□□□□□ -1.84
MSH3P20585 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.55□□□□□ -1.84
MSH3P20585 AP000403.1-201ENST00000603349 851 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.55□□□□□ -1.84
MSH3P20585 HMGN2P28-201ENST00000606102 262 ntBASIC3.55□□□□□ -1.84
MSH3P20585 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AP003355.3-201ENST00000623465 114 ntBASIC3.55□□□□□ -1.84
MSH3P20585 AC012442.3-202ENST00000636742 206 ntBASIC3.55□□□□□ -1.84
MSH3P20585 U6.98-201ENST00000637157 84 ntBASIC3.55□□□□□ -1.84
MSH3P20585 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
MSH3P20585 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms