Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 AL079305.1-201ENST00000623159 3008 ntBASIC3.23□□□□□ -1.89
HOXD4P09016 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXD4P09016 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXD4P09016 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD4P09016 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HOXD4P09016 SNORA31-201ENST00000362607 130 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 RNU6-253P-201ENST00000384730 105 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 MIR506-201ENST00000384998 124 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 U3.19-201ENST00000390893 196 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 SOD2P1-201ENST00000396543 562 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXD4P09016 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 RN7SKP111-201ENST00000410349 271 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC096632.1-201ENST00000427395 310 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC005019.1-201ENST00000436455 431 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 ISCA1P2-201ENST00000438679 421 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC118469.1-201ENST00000442943 488 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC017015.1-201ENST00000477387 286 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 TRBV12-2-201ENST00000489763 344 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC082651.2-201ENST00000496833 166 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 MTCYBP17-201ENST00000503579 789 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC005178.1-201ENST00000508392 440 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD4P09016 XKRY-201ENST00000510392 1100 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD4P09016 AP004242.1-201ENST00000533701 349 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXD4P09016 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC135279.1-201ENST00000543493 504 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC090502.2-201ENST00000549267 280 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD4P09016 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXD4P09016 BNIP3P11-201ENST00000603878 563 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC091931.1-201ENST00000623488 728 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HOXD4P09016 AC007494.3-201ENST00000624660 743 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC091965.5-201ENST00000624785 342 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 AC092184.1-201ENST00000625042 715 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 AL732372.2-225ENST00000642124 456 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HOXD4P09016 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXD4P09016 AL445523.1-201ENST00000451184 1362 ntBASIC3.22□□□□□ -1.89
HOXD4P09016 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXD4P09016 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
HOXD4P09016 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD4P09016 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD4P09016 AC021755.1-201ENST00000559747 1447 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AL157700.1-201ENST00000561973 1432 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXD4P09016 RNU1-33P-201ENST00000364249 162 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNU6-283P-201ENST00000364788 107 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNA5SP189-201ENST00000364920 115 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXD4P09016 RNU6-441P-201ENST00000384545 106 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 Y_RNA.560-201ENST00000384689 102 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNU2-28P-201ENST00000410457 189 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNA5SP120-201ENST00000410900 112 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNU6-55P-201ENST00000411092 107 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 RNU6-954P-201ENST00000411355 107 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 HMGB3P20-201ENST00000417997 600 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 SDCBPP2-201ENST00000424643 885 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 VN1R108P-201ENST00000431580 830 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 MRPS18BP2-201ENST00000434310 759 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 BX679664.1-201ENST00000434429 253 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 SETP5-201ENST00000437270 562 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AL138799.3-201ENST00000438968 350 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 MTND2P20-201ENST00000440805 661 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC125238.1-201ENST00000448842 249 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 OR6C5P-201ENST00000452388 923 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 SNORA59A-201ENST00000459326 152 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXD4P09016 RPL30P6-201ENST00000475925 342 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 AC104685.1-201ENST00000502445 371 ntBASIC3.21□□□□□ -1.9
HOXD4P09016 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.21□□□□□ -1.9
HOXD4P09016 AC112198.1-201ENST00000505369 1220 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms