Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RPL23AP55-201ENST00000498163 452 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 ENPP7P11-201ENST00000505915 627 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 RBBP4P6-201ENST00000508098 202 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA3O43365 RNU6-273P-201ENST00000516937 96 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 Y_RNA.718-201ENST00000517110 102 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC021006.3-201ENST00000530771 192 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA3O43365 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA3O43365 AP000763.2-201ENST00000540641 163 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL161713.1-201ENST00000555538 145 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA3O43365 MIR4330-201ENST00000579077 105 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 MIR3171-201ENST00000584270 74 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC012669.1-201ENST00000603209 283 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.6-201ENST00000603753 252 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.11-201ENST00000604059 253 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AP001330.4-201ENST00000604350 154 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 APOOP1-201ENST00000604695 592 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC008162.1-201ENST00000604718 254 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.1-201ENST00000604752 252 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.5-201ENST00000605253 252 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL034351.1-201ENST00000605288 668 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.12-201ENST00000605291 253 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.8-201ENST00000605353 252 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL670379.7-201ENST00000605823 252 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 AC243312.2-201ENST00000623340 601 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AC108751.5-201ENST00000492880 1336 ntBASIC4.11□□□□□ -1.75
HOXA3O43365 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA3O43365 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA3O43365 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 MTCO1P24-201ENST00000515438 1558 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA3O43365 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA3O43365 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HOXA3O43365 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXA3O43365 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA3O43365 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HOXA3O43365 AP000542.2-201ENST00000623199 6179 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA3O43365 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA3O43365 RNU6-1252P-201ENST00000363054 104 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 SNORD113-7-201ENST00000363762 77 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 RN7SKP113-201ENST00000363891 295 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 SNORD42.2-201ENST00000365570 69 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 RNU6-946P-201ENST00000383878 107 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 MIR135A2-201ENST00000384854 100 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 MIR589-201ENST00000385238 99 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXA3O43365 SNORA75.4-201ENST00000391278 119 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 MIR548K-201ENST00000408406 116 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 RNU4-46P-201ENST00000410818 138 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 CTSL3P-202ENST00000412179 788 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AL591848.1-201ENST00000413092 322 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 VN1R36P-201ENST00000414936 291 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA3O43365 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 RPL23AP33-201ENST00000442301 452 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 MTCO3P45-201ENST00000443036 613 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC112498.1-201ENST00000444401 332 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 AL590399.6-201ENST00000446396 307 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 GAPDHP27-201ENST00000447427 1020 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 Y_RNA.635-201ENST00000459041 101 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC008481.1-201ENST00000463278 396 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 RPL21P8-201ENST00000465083 535 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 RN7SL319P-201ENST00000480656 221 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC068587.1-201ENST00000483613 781 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms