Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC006512.1-201ENST00000468816 291 ntBASIC4.69□□□□□ -1.66
CBX4O00257 MTCYBP18-201ENST00000501056 747 ntBASIC4.69□□□□□ -1.66
CBX4O00257 HMGB1P41-201ENST00000520234 440 ntBASIC4.69□□□□□ -1.66
CBX4O00257 FAM60DP-201ENST00000524174 632 ntBASIC4.69□□□□□ -1.66
CBX4O00257 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.69□□□□□ -1.66
CBX4O00257 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.69□□□□□ -1.66
CBX4O00257 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.69□□□□□ -1.66
CBX4O00257 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.69□□□□□ -1.66
CBX4O00257 RN7SL435P-201ENST00000584418 282 ntBASIC4.69□□□□□ -1.66
CBX4O00257 AC012669.1-201ENST00000603209 283 ntBASIC4.69□□□□□ -1.66
CBX4O00257 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.69□□□□□ -1.66
CBX4O00257 BNIP3P10-201ENST00000605360 577 ntBASIC4.69□□□□□ -1.66
CBX4O00257 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.69□□□□□ -1.66
CBX4O00257 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.69□□□□□ -1.66
CBX4O00257 AL354950.2-201ENST00000617939 290 ntBASIC4.69□□□□□ -1.66
CBX4O00257 MIR6130-201ENST00000619419 109 ntBASIC4.69□□□□□ -1.66
CBX4O00257 AC024940.5-201ENST00000622889 474 ntBASIC4.69□□□□□ -1.66
CBX4O00257 AC015871.5-202ENST00000623252 701 ntBASIC4.69□□□□□ -1.66
CBX4O00257 AC006065.5-201ENST00000623427 349 ntBASIC4.69□□□□□ -1.66
CBX4O00257 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.69□□□□□ -1.66
CBX4O00257 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CBX4O00257 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.69□□□□□ -1.66
CBX4O00257 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CBX4O00257 AC126323.6-202ENST00000568092 3511 ntBASIC4.69□□□□□ -1.66
CBX4O00257 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
CBX4O00257 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 DDX10P1-201ENST00000448545 1933 ntBASIC4.68□□□□□ -1.66
CBX4O00257 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.68□□□□□ -1.66
CBX4O00257 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CBX4O00257 CBX3P1-201ENST00000325243 554 ntBASIC4.68□□□□□ -1.66
CBX4O00257 RNU6-451P-201ENST00000362921 107 ntBASIC4.68□□□□□ -1.66
CBX4O00257 RNU6-797P-201ENST00000363101 109 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 AL591416.1-201ENST00000404015 867 ntBASIC4.68□□□□□ -1.66
CBX4O00257 ELOCP19-201ENST00000411919 318 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.68□□□□□ -1.66
CBX4O00257 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.68□□□□□ -1.66
CBX4O00257 RPL36AP10-201ENST00000421785 322 ntBASIC4.68□□□□□ -1.66
CBX4O00257 EIF1P3-201ENST00000423841 334 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.68□□□□□ -1.66
CBX4O00257 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.68□□□□□ -1.66
CBX4O00257 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.68□□□□□ -1.66
CBX4O00257 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 AC005094.1-201ENST00000440420 368 ntBASIC4.68□□□□□ -1.66
CBX4O00257 RPL23AP93-201ENST00000440847 484 ntBASIC4.68□□□□□ -1.66
CBX4O00257 ISCUP1-201ENST00000454451 448 ntBASIC4.68□□□□□ -1.66
CBX4O00257 SNORD97-201ENST00000459187 142 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC078785.3-201ENST00000476607 425 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC041039.1-201ENST00000485656 536 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 RPS15AP36-201ENST00000492022 382 ntBASIC4.68□□□□□ -1.66
CBX4O00257 SNORD27.1-201ENST00000516319 72 ntBASIC4.68□□□□□ -1.66
CBX4O00257 RN7SKP21-201ENST00000516503 220 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.68□□□□□ -1.66
CBX4O00257 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.68□□□□□ -1.66
CBX4O00257 AC126177.3-201ENST00000551839 688 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC068831.4-201ENST00000556118 109 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 HMGB3P26-201ENST00000560051 582 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.68□□□□□ -1.66
CBX4O00257 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.68□□□□□ -1.66
CBX4O00257 AC023575.1-201ENST00000580510 358 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.68□□□□□ -1.66
CBX4O00257 AL356218.2-201ENST00000605264 187 ntBASIC4.68□□□□□ -1.66
CBX4O00257 RNA5SP108-201ENST00000605921 117 ntBASIC4.68□□□□□ -1.66
CBX4O00257 Y_RNA.804-201ENST00000615262 101 ntBASIC4.68□□□□□ -1.66
CBX4O00257 AC104985.2-201ENST00000620598 500 ntBASIC4.68□□□□□ -1.66
CBX4O00257 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.68□□□□□ -1.66
CBX4O00257 AC138649.5-201ENST00000637456 137 ntBASIC4.68□□□□□ -1.66
CBX4O00257 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.68□□□□□ -1.66
CBX4O00257 AC073544.1-201ENST00000600110 1595 ntBASIC4.68□□□□□ -1.66
CBX4O00257 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CBX4O00257 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 Z73965.1-201ENST00000623412 2297 ntBASIC4.67□□□□□ -1.66
CBX4O00257 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
CBX4O00257 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CBX4O00257 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.67□□□□□ -1.66
CBX4O00257 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 Y_RNA.22-201ENST00000362492 102 ntBASIC4.67□□□□□ -1.66
CBX4O00257 RNU1-83P-201ENST00000363426 164 ntBASIC4.67□□□□□ -1.66
CBX4O00257 RNU6-1155P-201ENST00000363554 107 ntBASIC4.67□□□□□ -1.66
CBX4O00257 RNU6-373P-201ENST00000411247 98 ntBASIC4.67□□□□□ -1.66
CBX4O00257 OR9R1P-201ENST00000412200 877 ntBASIC4.67□□□□□ -1.66
CBX4O00257 UBE2FP1-201ENST00000416536 447 ntBASIC4.67□□□□□ -1.66
CBX4O00257 RPS12P23-201ENST00000419579 400 ntBASIC4.67□□□□□ -1.66
CBX4O00257 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.67□□□□□ -1.66
CBX4O00257 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.67□□□□□ -1.66
CBX4O00257 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms