Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC88BA6NC98 PRELID2P1-201ENST00000552837 301 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU6-368P-201ENST00000620928 107 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 RNU6-538P-201ENST00000622329 107 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AP000553.5-201ENST00000641933 54 ntBASIC3.08□□□□□ -1.92
CCDC88BA6NC98 AC000367.1-201ENST00000452711 1766 ntBASIC3.07□□□□□ -1.92
CCDC88BA6NC98 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC88BA6NC98 SEPT7P7-201ENST00000420492 1301 ntBASIC3.07□□□□□ -1.92
CCDC88BA6NC98 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.07□□□□□ -1.92
CCDC88BA6NC98 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC88BA6NC98 AC098799.2-201ENST00000509466 868 ntBASIC3.07□□□□□ -1.92
CCDC88BA6NC98 SNORA31.15-201ENST00000516771 132 ntBASIC3.07□□□□□ -1.92
CCDC88BA6NC98 OR4T1P-201ENST00000554933 911 ntBASIC3.07□□□□□ -1.92
CCDC88BA6NC98 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC88BA6NC98 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC88BA6NC98 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC88BA6NC98 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC88BA6NC98 AC243772.1-201ENST00000451620 410 ntBASIC3.06□□□□□ -1.92
CCDC88BA6NC98 AC140059.1-201ENST00000489238 361 ntBASIC3.06□□□□□ -1.92
CCDC88BA6NC98 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC88BA6NC98 AC108078.2-201ENST00000510750 236 ntBASIC3.06□□□□□ -1.92
CCDC88BA6NC98 SNORA31.26-201ENST00000517250 137 ntBASIC3.06□□□□□ -1.92
CCDC88BA6NC98 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC88BA6NC98 AL353748.2-201ENST00000622148 471 ntBASIC3.06□□□□□ -1.92
CCDC88BA6NC98 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CCDC88BA6NC98 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC88BA6NC98 AC010329.2-201ENST00000595195 2737 ntBASIC3.06□□□□□ -1.92
CCDC88BA6NC98 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 MLLT10P2-201ENST00000506434 249 ntBASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 AC005539.1-201ENST00000443768 1479 ntBASIC3.05□□□□□ -1.92
CCDC88BA6NC98 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
CCDC88BA6NC98 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC88BA6NC98 DPPA2P1-201ENST00000428060 556 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 XKRY2-201ENST00000442362 1093 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
CCDC88BA6NC98 HMGN1P28-201ENST00000521340 364 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC88BA6NC98 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 SUB1P3-201ENST00000564581 315 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 AC004943.3-201ENST00000624116 600 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.04□□□□□ -1.92
CCDC88BA6NC98 AC114546.3-201ENST00000623582 1734 ntBASIC3.04□□□□□ -1.92
CCDC88BA6NC98 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
CCDC88BA6NC98 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC88BA6NC98 RPL7P46-201ENST00000425129 740 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 WARS2P1-201ENST00000429678 537 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AL590664.1-201ENST00000448065 339 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AC117532.1-201ENST00000514638 323 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AC090751.1-201ENST00000566966 267 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AL121917.1-203ENST00000605534 577 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 AC107021.2-201ENST00000567714 2095 ntBASIC3.03□□□□□ -1.92
CCDC88BA6NC98 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
CCDC88BA6NC98 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
CCDC88BA6NC98 Y_RNA.269-201ENST00000364685 89 ntBASIC3.03□□□□□ -1.93
CCDC88BA6NC98 RNU6-146P-201ENST00000384602 108 ntBASIC3.03□□□□□ -1.93
CCDC88BA6NC98 AL450338.1-201ENST00000407987 512 ntBASIC3.03□□□□□ -1.93
CCDC88BA6NC98 AC092638.1-201ENST00000411966 1275 ntBASIC3.03□□□□□ -1.93
CCDC88BA6NC98 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.03□□□□□ -1.93
CCDC88BA6NC98 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.03□□□□□ -1.93
CCDC88BA6NC98 DUXAP3-201ENST00000603616 594 ntBASIC3.03□□□□□ -1.93
CCDC88BA6NC98 AL359715.4-201ENST00000606629 1436 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 MIR337-201ENST00000362281 93 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC88BA6NC98 RPS7P9-201ENST00000414704 586 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 RPS15AP12-201ENST00000419498 388 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 AL645568.3-201ENST00000433683 316 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 HSPE1P22-201ENST00000456856 327 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 ISCA1P3-201ENST00000577104 373 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.02□□□□□ -1.93
CCDC88BA6NC98 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.02□□□□□ -1.93
CCDC88BA6NC98 AL035411.2-201ENST00000604022 421 ntBASIC3.02□□□□□ -1.93
CCDC88BA6NC98 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC88BA6NC98 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC3.01□□□□□ -1.93
CCDC88BA6NC98 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC88BA6NC98 SSXP1-201ENST00000453640 473 ntBASIC3.01□□□□□ -1.93
CCDC88BA6NC98 AC098583.1-201ENST00000480875 255 ntBASIC3.01□□□□□ -1.93
CCDC88BA6NC98 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
CCDC88BA6NC98 AC005951.1-201ENST00000576706 485 ntBASIC3.01□□□□□ -1.93
CCDC88BA6NC98 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC88BA6NC98 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC88BA6NC98 AL159169.2-201ENST00000610061 1269 ntBASIC3.01□□□□□ -1.93
CCDC88BA6NC98 AC048347.1-201ENST00000624621 427 ntBASIC3.01□□□□□ -1.93
CCDC88BA6NC98 HMGN2P35-201ENST00000412164 270 ntBASIC3□□□□□ -1.93
CCDC88BA6NC98 TOMM22P1-201ENST00000418578 312 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms