Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.27□□□□□ -1.41
VPS9D1Q9Y2B5 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS9D1Q9Y2B5 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
VPS9D1Q9Y2B5 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC011504.1-201ENST00000623331 4103 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 Y_RNA.121-201ENST00000363309 113 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 RNA5SP85-201ENST00000365378 119 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 SNORA22-201ENST00000383907 134 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 Y_RNA.542-201ENST00000384641 111 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AL096701.2-201ENST00000416920 238 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 USP9YP7-201ENST00000436723 430 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 RPEP4-201ENST00000437636 602 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC074290.1-201ENST00000448883 135 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 USP9YP32-201ENST00000452432 430 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 RANP2-201ENST00000456833 229 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC005165.2-201ENST00000466070 380 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC015524.1-201ENST00000491585 472 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 RAC1P5-201ENST00000512182 576 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AL352984.2-201ENST00000611153 546 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 AC005225.5-201ENST00000623547 2225 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 Z95114.1-201ENST00000624264 14574 ntBASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS9D1Q9Y2B5 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 Y_RNA.217-201ENST00000364214 105 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 U8.7-201ENST00000364940 136 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 MIR551B-201ENST00000384984 96 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 RPL7AP73-201ENST00000413490 353 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AC099677.3-201ENST00000427081 395 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AC128677.1-201ENST00000436016 442 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 RPL12P49-201ENST00000441100 121 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 IFNA11P-201ENST00000446352 526 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AL356981.1-201ENST00000454879 684 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 Y_RNA.641-201ENST00000459414 105 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 NDUFB5P1-201ENST00000508134 564 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 SUMO2P18-201ENST00000518873 252 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 RPL23AP87-202ENST00000573039 466 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 MIR3189-201ENST00000578735 73 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AP000787.2-201ENST00000604432 568 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 MIR6780B-201ENST00000610307 79 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AC004825.2-201ENST00000616634 455 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 AOX3P-204ENST00000491025 2107 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 MTND5P32-201ENST00000560711 1802 ntBASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS9D1Q9Y2B5 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 U3.6-201ENST00000363622 211 ntBASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 RPL23AP58-201ENST00000440453 469 ntBASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 AC064862.5-201ENST00000440618 334 ntBASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.24□□□□□ -1.41
VPS9D1Q9Y2B5 MRPS10P1-201ENST00000448483 130 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms