Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC009712.1-201ENST00000564938 316 ntBASIC6.08□□□□□ -1.44
SHROOM4Q9ULL8 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC6.08□□□□□ -1.44
SHROOM4Q9ULL8 LARP7P2-201ENST00000575306 125 ntBASIC6.08□□□□□ -1.44
SHROOM4Q9ULL8 MIR4760-201ENST00000585040 80 ntBASIC6.08□□□□□ -1.44
SHROOM4Q9ULL8 AC233280.2-201ENST00000603917 1070 ntBASIC6.08□□□□□ -1.44
SHROOM4Q9ULL8 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC6.08□□□□□ -1.44
SHROOM4Q9ULL8 FAM35DP-201ENST00000323387 2712 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AL136360.1-201ENST00000503377 1900 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AL138880.1-201ENST00000405824 642 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 RNU2-15P-201ENST00000410692 191 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 ELOCP23-201ENST00000452014 332 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 MTCO3P16-201ENST00000454456 754 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AC078918.1-201ENST00000498515 228 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 OR5AK1P-201ENST00000524837 922 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AC015917.1-201ENST00000579654 510 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 ATP1B3P1-201ENST00000605365 821 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 AL356321.1-201ENST00000621360 228 ntBASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC6.07□□□□□ -1.44
SHROOM4Q9ULL8 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 SNORA31-201ENST00000362607 130 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 RNA5SP258-201ENST00000362750 119 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 CUBN-201ENST00000377823 705 ntTSL 3 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AL049610.1-201ENST00000423374 372 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 NPM1P49-201ENST00000448027 714 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AC133473.1-201ENST00000455173 299 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 FAM172BP-201ENST00000487497 1089 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AC006390.1-201ENST00000508068 283 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 XKRY-201ENST00000510392 1100 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 RNU2-58P-201ENST00000516403 183 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 HMGB1P50-201ENST00000605814 607 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AC116618.1-201ENST00000634617 774 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 MIR4278-201ENST00000636094 69 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 MIR622-201ENST00000638396 96 ntBASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHROOM4Q9ULL8 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC027287.1-201ENST00000553115 1453 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 RNU6-989P-201ENST00000362756 107 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 RNU6-335P-201ENST00000364563 113 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 RNU6-1181P-201ENST00000384191 106 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 RPS4XP8-201ENST00000402039 771 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC093156.1-201ENST00000440382 670 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 Z73417.1-201ENST00000447373 778 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 snoU109.4-201ENST00000458953 143 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC026410.2-201ENST00000460281 156 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC087312.1-201ENST00000471411 480 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 RNU1-41P-201ENST00000516161 162 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 RNU1-48P-201ENST00000516400 162 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC104986.1-201ENST00000517978 436 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC107934.2-201ENST00000518653 310 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC091057.2-201ENST00000602594 792 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 BNIP3P10-201ENST00000605360 577 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 AC131235.4-201ENST00000609288 620 ntBASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHROOM4Q9ULL8 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 MTND4P26-201ENST00000415971 1359 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 PSMA6P3-201ENST00000428242 164 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 MRPS31P2-201ENST00000451581 518 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 RPL31P13-201ENST00000484151 370 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AC090453.1-201ENST00000495560 436 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 MTCYBP17-201ENST00000503579 789 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AP001372.4-201ENST00000524889 472 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 EEF1B2P4-201ENST00000551398 348 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AC245036.5-201ENST00000596330 847 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 AC007349.4-201ENST00000608114 532 ntBASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SHROOM4Q9ULL8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 187 ms