Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC007537.2-201ENST00000472093 511 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AL136126.1-201ENST00000473603 402 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC012170.1-201ENST00000495139 359 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 FTH1P9-201ENST00000513251 355 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 NARSP2-201ENST00000518524 679 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 IGLVIV-53-201ENST00000520107 367 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AP002963.1-201ENST00000530590 184 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 DEFB131E-202ENST00000602581 683 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC025946.2-201ENST00000603398 234 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC087752.4-201ENST00000605911 462 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC113194.1-201ENST00000606037 500 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC092354.2-201ENST00000607786 514 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AC104073.3-201ENST00000610942 955 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 MIR6075-201ENST00000620782 95 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 AP003355.3-201ENST00000623465 114 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 FAM35DP-201ENST00000323387 2712 ntBASIC3.79□□□□□ -1.8
SIX4Q9UIU6 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.79□□□□□ -1.8
SIX4Q9UIU6 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 GDI2P1-201ENST00000429312 1336 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 Y_RNA.97-201ENST00000363094 102 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RNU5F-7P-201ENST00000363696 115 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 SNORA75-201ENST00000384158 137 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MIR490-201ENST00000384865 128 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 SNORD17-201ENST00000390930 237 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RNU6-192P-201ENST00000391253 100 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 HMGB1P17-201ENST00000403495 628 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL663109.1-201ENST00000411498 844 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC109780.2-201ENST00000413467 845 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RPS7P13-201ENST00000413955 498 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 CDK8P2-201ENST00000415020 547 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MTND1P28-201ENST00000435623 950 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MTND1P34-201ENST00000438556 671 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC007967.1-201ENST00000455422 1159 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 TRBV26-201ENST00000456572 344 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RN7SL594P-201ENST00000470590 287 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC025518.1-201ENST00000479856 347 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RPS3AP50-201ENST00000487064 803 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC016065.2-201ENST00000514530 444 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL139174.1-201ENST00000531489 886 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC013828.2-201ENST00000532487 235 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC067852.3-201ENST00000589177 561 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC004492.1-201ENST00000607036 742 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 U3.45-201ENST00000607547 219 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MIR92B-201ENST00000607575 96 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC005332.10-201ENST00000612725 619 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC100793.4-201ENST00000613683 429 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 AC099842.1-201ENST00000619919 596 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
SIX4Q9UIU6 OTUD4P1-201ENST00000237841 3067 ntBASIC3.78□□□□□ -1.8
SIX4Q9UIU6 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 ELL2P4-201ENST00000446870 1376 ntBASIC3.77□□□□□ -1.81
SIX4Q9UIU6 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 FGF7P2-201ENST00000332473 296 ntBASIC3.77□□□□□ -1.81
SIX4Q9UIU6 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SIX4Q9UIU6 RNU6-1119P-201ENST00000384349 108 ntBASIC3.77□□□□□ -1.81
SIX4Q9UIU6 MIR218-2-201ENST00000385006 110 ntBASIC3.77□□□□□ -1.81
SIX4Q9UIU6 MIR1183-201ENST00000408856 89 ntBASIC3.77□□□□□ -1.81
SIX4Q9UIU6 Y_RNA.599-201ENST00000410489 109 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms