Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNU6-169P-201ENST00000365336 107 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNU6-996P-201ENST00000365438 107 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNU6-1032P-201ENST00000384100 107 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 MIR1-2-201ENST00000384961 85 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AL357515.1-201ENST00000402967 542 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNU4-34P-201ENST00000410431 124 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNA5SP345-201ENST00000410646 108 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RN7SKP213-201ENST00000410746 298 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 OFD1P1Y-201ENST00000411756 1225 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 TBCAP2-201ENST00000416175 326 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 TXNP1-201ENST00000441872 371 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AL035666.1-201ENST00000446195 348 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RPSAP50-201ENST00000481955 852 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AL163973.1-201ENST00000484753 577 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 NIP7P2-201ENST00000485801 544 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC098591.2-201ENST00000510152 315 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 FAM206BP-201ENST00000510179 541 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC021146.1-201ENST00000511202 716 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNA5SP392-201ENST00000516905 112 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 RNU6-1220P-201ENST00000517126 108 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 NARSP2-201ENST00000518524 679 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AP000676.2-201ENST00000529711 301 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 OR4R1P-201ENST00000529879 463 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AP001521.1-201ENST00000609150 300 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AP004289.2-201ENST00000444413 1457 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC099654.2-201ENST00000433031 1980 ntBASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC39Q9UFE4 ZNF807-201ENST00000328088 1707 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC090017.1-201ENST00000548612 1779 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 RNU6-1097P-201ENST00000363586 107 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 Y_RNA.527-201ENST00000384573 102 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 Y_RNA.574-201ENST00000384766 95 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 RNU4-26P-201ENST00000410270 107 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AL160275.2-201ENST00000412010 394 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC096644.2-201ENST00000429278 159 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 GPR143P-201ENST00000434155 205 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC104058.1-201ENST00000448028 297 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC090142.1-201ENST00000465776 462 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC015724.1-201ENST00000478577 156 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 RPL32P9-201ENST00000487963 407 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC091885.1-201ENST00000506658 268 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 MTCYBP40-201ENST00000509390 1135 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 Y_RNA.682-201ENST00000516457 100 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 RN7SL753P-201ENST00000581238 290 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC010424.2-201ENST00000607594 443 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC137590.2-201ENST00000619709 240 ntBASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC39Q9UFE4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC39Q9UFE4 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms