Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 AL390862.1-201ENST00000635467 1469 ntBASIC3.21□□□□□ -1.9
LHX3Q9UBR4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LHX3Q9UBR4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AL356473.1-201ENST00000406203 1408 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 Y_RNA.192-201ENST00000363977 102 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 RNU6-636P-201ENST00000384598 107 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 RNU6-1242P-201ENST00000391052 103 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AP000567.1-201ENST00000406413 156 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC007742.1-201ENST00000425789 329 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AL512649.1-201ENST00000428997 581 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 ELOCP26-201ENST00000436067 329 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 RPL21P134-201ENST00000453468 483 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC078785.3-201ENST00000476607 425 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC023424.2-201ENST00000493479 777 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 RNY4P37-201ENST00000516225 96 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 RNU6-415P-201ENST00000516252 97 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC104027.1-201ENST00000521887 300 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 SNRPGP16-201ENST00000533275 226 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC004024.1-201ENST00000549244 247 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC009220.3-201ENST00000604318 586 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC009974.1-201ENST00000608881 455 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC027449.1-201ENST00000608890 407 ntBASIC3.2□□□□□ -1.9
LHX3Q9UBR4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.2□□□□□ -1.9
LHX3Q9UBR4 OR5BR1P-201ENST00000524992 1330 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 OR4G11P-202ENST00000642116 1414 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 Y_RNA.311-201ENST00000365068 96 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 SKINT1L-201ENST00000401057 817 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 SNORA11.1-201ENST00000408133 129 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 RNU2-47P-201ENST00000410649 186 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC006539.3-201ENST00000454258 129 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 NECAP1P2-201ENST00000455668 727 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 CFTRP1-201ENST00000456646 183 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC116353.3-201ENST00000511215 249 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC006499.2-201ENST00000513470 337 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 SNORA31.8-201ENST00000516327 108 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC090695.1-201ENST00000561269 1222 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 FAM60BP-201ENST00000578364 658 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC022662.1-201ENST00000580252 331 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 UBL5P2-201ENST00000583788 219 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 VN1R78P-201ENST00000597393 564 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 PRELID3BP8-201ENST00000604148 295 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AP001330.4-201ENST00000604350 154 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AL031176.1-201ENST00000604554 466 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC131235.4-201ENST00000609288 620 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AL078595.3-201ENST00000623815 1166 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 AC090897.3-201ENST00000636973 1157 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 MTND4P34-201ENST00000572715 1371 ntBASIC3.19□□□□□ -1.9
LHX3Q9UBR4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LHX3Q9UBR4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms