Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 CYCSP2-201ENST00000558168 301 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC090615.1-201ENST00000577519 154 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 FAM60BP-201ENST00000578364 658 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 MIR5187-201ENST00000583479 76 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC004853.1-201ENST00000604902 698 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC105148.1-201ENST00000604961 409 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RNU1-30P-201ENST00000606575 163 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AL732372.2-225ENST00000642124 456 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC093010.3-201ENST00000570269 15214 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 SGO1P2-201ENST00000429458 1589 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL022578.1-201ENST00000439330 1433 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 OR5H2-201ENST00000355273 945 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RNA5SP383-201ENST00000362934 120 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 MIR513B-201ENST00000385136 84 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RNU4-65P-201ENST00000410473 140 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 USP9YP33-201ENST00000412220 421 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RAB9AP3-201ENST00000412737 573 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 MRPL50P2-201ENST00000416821 482 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 MTCYBP38-201ENST00000417160 1123 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 BEND7P1-201ENST00000422058 457 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 MTCYBP45-201ENST00000435243 565 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RPS25P9-201ENST00000435591 252 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 USP9YP35-201ENST00000435696 412 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 MTND3P1-201ENST00000441336 220 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RPL17P49-201ENST00000443728 411 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RAB9AP1-201ENST00000449393 573 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 PRSS3P4-201ENST00000453323 162 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 USP9YP10-201ENST00000454868 628 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 HMGN1P18-201ENST00000457642 277 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL133162.1-201ENST00000463228 453 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC104090.1-201ENST00000506341 1171 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 RNU1-61P-201ENST00000516107 151 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AP001372.4-201ENST00000524889 472 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 DUXAP11-201ENST00000603858 526 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL592221.1-201ENST00000605266 382 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC092354.2-201ENST00000607786 514 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL121772.2-201ENST00000614331 297 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL445264.1-201ENST00000621719 171 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AL732618.1-201ENST00000623251 301 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 DDX43P2-201ENST00000604753 1354 ntBASIC3.22□□□□□ -1.89
DDX28Q9NUL7 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX28Q9NUL7 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.89
DDX28Q9NUL7 AC103988.1-201ENST00000566382 2177 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 MIR148B-201ENST00000362252 99 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 MIR208A-201ENST00000362287 71 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 DYNLT3P1-201ENST00000378574 347 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.21□□□□□ -1.9
DDX28Q9NUL7 AP000907.1-201ENST00000428428 510 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 RPL23AP69-201ENST00000431134 458 ntBASIC3.21□□□□□ -1.9
DDX28Q9NUL7 FGF7P5-201ENST00000441829 291 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms