Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC019193.2-201ENST00000610012 634 ntBASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 AC069234.5-201ENST00000611056 416 ntBASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 USP8P1-201ENST00000494673 3183 ntBASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
TRAIPQ9BWF2 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.71□□□□□ -1.49
TRAIPQ9BWF2 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
TRAIPQ9BWF2 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.49
TRAIPQ9BWF2 AL442639.1-201ENST00000625030 1899 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 RNU6-845P-201ENST00000362578 103 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 MIR600-201ENST00000385007 98 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 MIR514A2-201ENST00000385131 88 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 MIR514A3-201ENST00000385132 88 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 RNA5SP241-201ENST00000391326 114 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 RPS4XP9-201ENST00000405151 780 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AL591704.1-201ENST00000432574 275 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 SCARNA18-201ENST00000459004 134 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC087588.1-201ENST00000462203 316 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 HMGN2P26-201ENST00000463169 339 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AP000797.2-201ENST00000475768 606 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC108475.1-201ENST00000507880 950 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC004980.4-201ENST00000513375 203 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP147-201ENST00000517154 244 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 BTF3P12-201ENST00000519620 469 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 OR5D17P-201ENST00000531492 978 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC007424.1-203ENST00000554613 687 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AL359219.2-201ENST00000555184 348 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AL121576.1-201ENST00000556055 276 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC008814.1-201ENST00000603797 406 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC090617.10-201ENST00000624308 134 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC073544.1-201ENST00000600110 1595 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 AP004289.2-201ENST00000444413 1457 ntBASIC5.71□□□□□ -1.5
TRAIPQ9BWF2 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC116096.1-201ENST00000566804 2314 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP104-201ENST00000362605 328 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 RNU4-20P-201ENST00000365601 151 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 UBE2V1P2-201ENST00000397758 440 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 RNU2-41P-201ENST00000410991 178 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC245054.1-201ENST00000420944 258 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AL365400.1-201ENST00000431854 640 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 NRBF2P3-201ENST00000432731 865 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AL590639.1-201ENST00000456484 337 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC006427.1-201ENST00000514359 712 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 RNU6-1256P-201ENST00000516539 103 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 RNA5SP468-201ENST00000516782 93 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 CDH12P4-201ENST00000517835 295 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 CDH12P3-201ENST00000517935 295 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 CDH12P1-201ENST00000518435 295 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 RN7SL290P-201ENST00000578661 300 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC093799.2-201ENST00000610062 578 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms