Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
NUP88Q99567 RPL17P49-201ENST00000443728 411 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AL162388.1-201ENST00000450912 352 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.66□□□□□ -1.66
NUP88Q99567 AC006517.1-201ENST00000480485 328 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.66□□□□□ -1.66
NUP88Q99567 AC017037.2-201ENST00000513850 890 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 RNA5SP179-201ENST00000517284 121 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AP003467.2-201ENST00000520175 319 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 DEFB109D-201ENST00000529497 240 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 NTS-203ENST00000551529 801 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC4.66□□□□□ -1.66
NUP88Q99567 MIR3682-201ENST00000581338 84 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.66□□□□□ -1.66
NUP88Q99567 AL136363.2-201ENST00000604173 851 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC091167.4-201ENST00000605079 184 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC103710.1-201ENST00000610003 901 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP88Q99567 FP236240.3-201ENST00000623061 327 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.66□□□□□ -1.66
NUP88Q99567 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.66□□□□□ -1.66
NUP88Q99567 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 AC068254.2-201ENST00000623938 3577 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 AC244517.1-201ENST00000606030 2086 ntBASIC4.66□□□□□ -1.66
NUP88Q99567 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NUP88Q99567 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.65□□□□□ -1.66
NUP88Q99567 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
NUP88Q99567 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.65□□□□□ -1.66
NUP88Q99567 RNA5SP399-201ENST00000364003 117 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 SNORA62.3-201ENST00000365110 153 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 MIR30B-201ENST00000384850 88 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 SNORD115.1-201ENST00000391109 76 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 RNU6-192P-201ENST00000391253 100 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AL031779.1-201ENST00000415663 330 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.65□□□□□ -1.67
NUP88Q99567 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.65□□□□□ -1.67
NUP88Q99567 BX890604.2-201ENST00000427883 474 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 RPS24P1-201ENST00000438550 371 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 RPL23AP41-201ENST00000484754 458 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 MTND1P3-201ENST00000484956 952 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.65□□□□□ -1.67
NUP88Q99567 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.65□□□□□ -1.67
NUP88Q99567 DUXAP2-201ENST00000519198 589 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AP003497.1-201ENST00000528472 562 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
NUP88Q99567 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.65□□□□□ -1.67
NUP88Q99567 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.65□□□□□ -1.67
NUP88Q99567 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.65□□□□□ -1.67
NUP88Q99567 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.65□□□□□ -1.67
NUP88Q99567 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.65□□□□□ -1.67
NUP88Q99567 AC009101.1-201ENST00000568135 242 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 ZNF415P1-201ENST00000582279 1166 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC005255.1-201ENST00000593748 216 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.65□□□□□ -1.67
NUP88Q99567 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.65□□□□□ -1.67
NUP88Q99567 DEFB131E-202ENST00000602581 683 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AL365503.1-201ENST00000605247 905 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 NDUFA8P1-201ENST00000605525 367 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 TUG1_1.1-201ENST00000610654 145 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC009159.1-201ENST00000618386 642 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC026585.1-201ENST00000619582 524 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC002550.2-201ENST00000621246 394 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 MIR7702-201ENST00000621931 59 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AC112204.3-201ENST00000623822 332 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.65□□□□□ -1.67
NUP88Q99567 MARK2P15-201ENST00000432204 2186 ntBASIC4.65□□□□□ -1.67
NUP88Q99567 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
NUP88Q99567 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
NUP88Q99567 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP88Q99567 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.64□□□□□ -1.67
NUP88Q99567 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
NUP88Q99567 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP88Q99567 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.64□□□□□ -1.67
NUP88Q99567 RNU6-1078P-201ENST00000364522 103 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
NUP88Q99567 MIR670-201ENST00000390142 98 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 RNA5SP171-201ENST00000391071 115 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AC078974.1-201ENST00000411597 223 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 JKAMPP1-201ENST00000413804 919 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 C1DP2-201ENST00000418167 426 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.64□□□□□ -1.67
NUP88Q99567 GOT2P5-201ENST00000433995 546 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.64□□□□□ -1.67
NUP88Q99567 ARPC3P1-201ENST00000437218 533 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 MTND6P13-201ENST00000443510 523 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 AL500522.2-201ENST00000448562 343 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 RAD23BP3-201ENST00000454157 1152 ntBASIC4.64□□□□□ -1.67
NUP88Q99567 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 158.4 ms