Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 SETP7-201ENST00000552169 453 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 HIGD1AP17-201ENST00000554576 276 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 MTND3P13-201ENST00000574391 343 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 COX6CP3-201ENST00000580869 223 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 MIR4637-201ENST00000582405 84 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC012468.1-201ENST00000604888 430 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC084824.4-201ENST00000620106 731 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AL356585.4-201ENST00000623078 1229 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC008264.2-201ENST00000610193 3731 ntBASIC3.17□□□□□ -1.9
VPS35Q96QK1 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
VPS35Q96QK1 AC073346.2-201ENST00000624724 2058 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 RPL7P26-201ENST00000333817 754 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 RNU5E-10P-201ENST00000363506 118 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 SNORA70.4-201ENST00000365509 134 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 SNORA7.4-201ENST00000384249 137 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL137014.1-201ENST00000420490 1226 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 MTCO1P39-201ENST00000426148 480 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 MTND2P5-201ENST00000432656 1006 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC005297.2-201ENST00000450430 606 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 SUMO2P2-201ENST00000456482 255 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 snoU13.22-201ENST00000459428 104 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 ST13P14-201ENST00000474095 734 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 SCARNA20.6-201ENST00000517251 106 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 SLC2A13P1-201ENST00000531560 322 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL391156.1-201ENST00000554965 554 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 MIR4474-201ENST00000579189 78 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AC004009.2-201ENST00000623016 728 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 AP002907.1-201ENST00000606361 1430 ntBASIC3.16□□□□□ -1.9
VPS35Q96QK1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VPS35Q96QK1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS35Q96QK1 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.15□□□□□ -1.9
VPS35Q96QK1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS35Q96QK1 RNA5SP383-201ENST00000362934 120 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 SNORA38.1-201ENST00000364172 131 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AL031121.1-201ENST00000406553 254 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 HMGB3P23-201ENST00000414981 585 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AL353678.1-201ENST00000422735 741 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 UBE2D3P2-201ENST00000424409 445 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 EZH2P1-201ENST00000431167 291 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 GAPDHP27-201ENST00000447427 1020 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AL589880.1-201ENST00000448271 287 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC104978.1-201ENST00000449387 391 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC115115.1-201ENST00000449927 248 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 BX510359.1-201ENST00000456973 237 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 ARPC3P2-201ENST00000457786 533 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 RN7SL863P-201ENST00000462370 296 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 RPL21P8-201ENST00000465083 535 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 TMEM251P1-201ENST00000503717 318 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 COX7A2P2-201ENST00000505291 250 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 HSPE1P3-201ENST00000559254 309 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC034268.2-201ENST00000571784 482 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC069431.2-201ENST00000604149 1099 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC005014.3-201ENST00000605985 190 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 AC104763.3-201ENST00000613765 618 ntBASIC3.15□□□□□ -1.91
VPS35Q96QK1 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms