Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 XIAPP3-201ENST00000312918 795 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HPS3Q969F9 Y_RNA.126-201ENST00000363382 111 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
HPS3Q969F9 CCNG1P1-201ENST00000406783 885 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 RNU6-712P-201ENST00000410558 100 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 RN7SKP263-201ENST00000411194 309 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 MTND1P21-201ENST00000412991 285 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 CCDC58P2-201ENST00000417131 366 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC104651.1-201ENST00000427559 735 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC009961.2-201ENST00000435771 251 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.54□□□□□ -1.68
HPS3Q969F9 RPL23AP46-201ENST00000438548 490 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC069285.2-201ENST00000440210 275 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC4.54□□□□□ -1.68
HPS3Q969F9 RAD23BP3-201ENST00000454157 1152 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC234775.1-201ENST00000454247 670 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 RNA5SP246-201ENST00000458909 119 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HPS3Q969F9 AC055855.1-201ENST00000489563 579 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
HPS3Q969F9 RPL37P25-201ENST00000507308 276 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC017037.1-201ENST00000508460 471 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.54□□□□□ -1.68
HPS3Q969F9 RNU2-46P-201ENST00000517038 113 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 MTCO2P4-201ENST00000517968 247 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AP003730.1-201ENST00000524605 285 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.54□□□□□ -1.68
HPS3Q969F9 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
HPS3Q969F9 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.54□□□□□ -1.68
HPS3Q969F9 AC099489.2-201ENST00000574976 260 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 MIR3913-1-201ENST00000577744 102 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC006254.3-201ENST00000603353 884 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AL355472.4-201ENST00000610233 626 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC090970.3-201ENST00000612566 866 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 AC009268.2-201ENST00000621925 457 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 MIR7702-201ENST00000621931 59 ntBASIC4.54□□□□□ -1.68
HPS3Q969F9 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
HPS3Q969F9 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HPS3Q969F9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HPS3Q969F9 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HPS3Q969F9 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HPS3Q969F9 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
HPS3Q969F9 Y_RNA.6-201ENST00000362350 114 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 U8.3-201ENST00000363321 132 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 RNA5SP479-201ENST00000364858 117 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 MIR3074-201ENST00000384885 81 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AL583834.1-201ENST00000406943 343 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 RPS7P15-201ENST00000415804 584 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 BEND7P1-201ENST00000422058 457 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AL589872.1-201ENST00000426602 288 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 USP9YP28-201ENST00000435142 589 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HPS3Q969F9 AL353748.1-201ENST00000440753 474 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AL121871.1-201ENST00000443413 436 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.53□□□□□ -1.68
HPS3Q969F9 NUTF2P7-201ENST00000453086 375 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AC010618.1-201ENST00000469924 477 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.53□□□□□ -1.68
HPS3Q969F9 RPS27AP13-201ENST00000498403 237 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC105252.1-201ENST00000503089 286 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC107401.1-201ENST00000503426 685 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 RNU6-1095P-201ENST00000516148 108 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 RNU6-430P-201ENST00000517078 107 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.53□□□□□ -1.68
HPS3Q969F9 HMGN1P28-201ENST00000521340 364 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AP003181.2-201ENST00000528941 181 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.53□□□□□ -1.68
HPS3Q969F9 MIR3160-1-201ENST00000577972 85 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AL161729.4-201ENST00000604650 476 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AL021997.1-201ENST00000605757 193 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 HMGN2P28-201ENST00000606102 262 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC091304.9-201ENST00000612091 226 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AC012150.2-201ENST00000621300 544 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.53□□□□□ -1.68
HPS3Q969F9 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AC099654.12-201ENST00000639868 649 ntBASIC4.53□□□□□ -1.68
HPS3Q969F9 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.53□□□□□ -1.68
HPS3Q969F9 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HPS3Q969F9 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.69
HPS3Q969F9 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.69
HPS3Q969F9 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.52□□□□□ -1.69
HPS3Q969F9 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.52□□□□□ -1.69
HPS3Q969F9 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.52□□□□□ -1.69
HPS3Q969F9 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms