Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC119751.4-201ENST00000507498 357 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC092593.2-201ENST00000513866 913 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RNU6-1225P-201ENST00000516336 65 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC022690.1-201ENST00000526681 550 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC106785.1-201ENST00000565935 262 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC091057.2-201ENST00000602594 792 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AL162713.1-201ENST00000604480 262 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC069304.2-201ENST00000605154 435 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC097504.2-201ENST00000608088 454 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC009464.1-201ENST00000615731 469 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 MIR6810-201ENST00000622701 70 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC109454.4-201ENST00000623411 649 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AL353743.1-202ENST00000431724 1695 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 ZNF807-201ENST00000328088 1707 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 CD24P4-201ENST00000382840 243 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 U3.19-201ENST00000390893 196 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 VN1R51P-201ENST00000411675 945 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 RPL23AP58-201ENST00000440453 469 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC109925.1-201ENST00000478069 331 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC134050.1-201ENST00000495088 933 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 MTCYBP17-201ENST00000503579 789 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC111000.2-201ENST00000507775 550 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 SNORA31.1-201ENST00000515993 133 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 SNORA31.5-201ENST00000516190 133 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 RNY4P37-201ENST00000516225 96 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC008127.2-201ENST00000549925 1075 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 DUXAP4-201ENST00000603046 613 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AL035411.2-201ENST00000604022 421 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC011458.1-201ENST00000604034 617 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 RNU4-5P-201ENST00000607255 135 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AL157392.4-201ENST00000609756 345 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC004696.1-201ENST00000614345 607 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC039056.2-201ENST00000622261 511 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC034229.5-201ENST00000624258 185 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 CYP3A51P-201ENST00000633513 256 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC012442.3-202ENST00000636742 206 ntBASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC54Q8NEL0 AC092447.7-201ENST00000422212 1621 ntBASIC2.71□□□□□ -1.97
CCDC54Q8NEL0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.97
CCDC54Q8NEL0 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AL049780.3-201ENST00000624612 1583 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 ZNF29P-201ENST00000225587 168 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RNU6-343P-201ENST00000364709 104 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 SNORA14A-201ENST00000364773 135 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 CRP-202ENST00000368110 667 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 SNORD15B-201ENST00000384714 146 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MIR200C-201ENST00000384980 68 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 MIR506-201ENST00000384998 124 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 ERHP2-201ENST00000402323 299 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RPL19P1-201ENST00000411635 428 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RAD23BP2-201ENST00000416003 1207 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 Z75741.2-201ENST00000417272 1167 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 RPL36AP36-201ENST00000418616 301 ntBASIC2.71□□□□□ -1.98
CCDC54Q8NEL0 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 164.5 ms