Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC040174.2-201ENST00000602701 465 ntBASIC1.22□□□□□ -2.21
LINC00643Q86TS7 KATNBL1P1-201ENST00000605192 748 ntBASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC103810.6-201ENST00000606708 136 ntBASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AP005137.2-201ENST00000609238 400 ntBASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC025588.4-201ENST00000615802 908 ntBASIC1.22□□□□□ -2.21
LINC00643Q86TS7 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.22□□□□□ -2.21
LINC00643Q86TS7 SDAD1P2-201ENST00000441308 2028 ntBASIC1.22□□□□□ -2.21
LINC00643Q86TS7 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 RNU6-697P-201ENST00000363348 107 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 RNU6-1293P-201ENST00000384077 107 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 RPL7P27-201ENST00000403775 720 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 TMEM167AP1-201ENST00000423409 219 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 RNU1-98P-201ENST00000458992 160 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AP001486.1-201ENST00000463339 476 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AL121769.1-201ENST00000469473 401 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC022447.3-201ENST00000506865 495 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 MIR2116-201ENST00000517221 80 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 RNU2-19P-201ENST00000517288 84 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AP005902.1-201ENST00000521358 186 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC021269.2-201ENST00000532318 330 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 CBX3P4-201ENST00000538909 354 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC093227.2-201ENST00000589357 285 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC015849.6-201ENST00000605454 474 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC126118.1-201ENST00000607744 628 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AL355810.1-201ENST00000614629 552 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 MIR7973-1-201ENST00000614683 76 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 MLECP1-201ENST00000615893 709 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 MESTIT1_2.1-201ENST00000616328 235 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 RNU6-156P-201ENST00000621869 107 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC026422.1-201ENST00000623961 452 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AC024023.1-201ENST00000624530 922 ntBASIC1.21□□□□□ -2.22
LINC00643Q86TS7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.21□□□□□ -2.22
LINC00643Q86TS7 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 CCT4P2-201ENST00000233836 1548 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 RNU1-105P-201ENST00000363470 161 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 RNA5SP363-201ENST00000365072 115 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 CRP-202ENST00000368110 667 ntTSL 3 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AL592148.1-201ENST00000413568 445 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 RPS29P4-201ENST00000414733 161 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 MTCO3P12-201ENST00000416718 547 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC079355.1-201ENST00000421770 223 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 HSPE1P21-201ENST00000438283 308 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AL360221.1-201ENST00000445989 335 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC005297.2-201ENST00000450430 606 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC092798.1-201ENST00000458542 409 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC072039.1-201ENST00000477611 581 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 SNORA31.8-201ENST00000516327 108 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 HSBP1P1-201ENST00000555205 166 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 MIR3618-201ENST00000580330 88 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 UBE2L4-201ENST00000587688 464 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC024220.1-201ENST00000603675 484 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC006023.1-201ENST00000603944 259 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AL513477.2-201ENST00000607858 568 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC079395.3-201ENST00000615161 484 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.2□□□□□ -2.22
LINC00643Q86TS7 AC123912.3-201ENST00000600907 1367 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 ELF2P3-201ENST00000445099 1506 ntBASIC1.2□□□□□ -2.22
LINC00643Q86TS7 SNORA18.3-201ENST00000384122 132 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms