Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC006254.3-201ENST00000603353 884 ntBASIC1.22□□□□□ -2.21
HSPG2P98160 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.22□□□□□ -2.21
HSPG2P98160 MIR6766-201ENST00000622641 72 ntBASIC1.22□□□□□ -2.21
HSPG2P98160 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC1.22□□□□□ -2.21
HSPG2P98160 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.21□□□□□ -2.22
HSPG2P98160 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
HSPG2P98160 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC1.21□□□□□ -2.22
HSPG2P98160 NDUFB4P9-201ENST00000511646 388 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.21□□□□□ -2.22
HSPG2P98160 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC1.21□□□□□ -2.22
HSPG2P98160 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
HSPG2P98160 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HSPG2P98160 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
HSPG2P98160 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
HSPG2P98160 AL450326.2-201ENST00000421913 1962 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 ERHP2-201ENST00000402323 299 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 VN1R31P-201ENST00000417498 730 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.21□□□□□ -2.22
HSPG2P98160 AL845331.3-202ENST00000562856 261 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 AL354943.1-201ENST00000572103 781 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 LRRC37A5P-203ENST00000580181 585 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.21□□□□□ -2.22
HSPG2P98160 MIR6515-201ENST00000619843 57 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
HSPG2P98160 CDC27P2-201ENST00000425026 1922 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 AF127577.6-201ENST00000623352 2191 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 U3.37-201ENST00000408528 213 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 POLHP1-201ENST00000411806 470 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 UBE2V1P5-201ENST00000440070 405 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.21□□□□□ -2.22
HSPG2P98160 OR52A4P-203ENST00000498233 1014 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.21□□□□□ -2.22
HSPG2P98160 AC008526.1-201ENST00000509149 338 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 IGLVIV-66-1-201ENST00000521832 460 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 OR4R2P-201ENST00000530815 597 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.21□□□□□ -2.22
HSPG2P98160 AL353748.2-201ENST00000622148 471 ntBASIC1.21□□□□□ -2.22
HSPG2P98160 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HSPG2P98160 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
HSPG2P98160 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.2□□□□□ -2.22
HSPG2P98160 AC008173.1-201ENST00000418901 264 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 RPS4XP11-201ENST00000446897 772 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 RNA5SP385-201ENST00000515947 110 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 HPVC1-201ENST00000629899 1198 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.2□□□□□ -2.22
HSPG2P98160 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HSPG2P98160 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.2□□□□□ -2.22
HSPG2P98160 RPS3AP9-201ENST00000417027 792 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AL358075.3-201ENST00000426289 226 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 SAR1AP4-201ENST00000429225 591 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 AL389895.1-201ENST00000554127 252 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AC010297.1-201ENST00000623948 149 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.2□□□□□ -2.22
HSPG2P98160 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.2□□□□□ -2.22
HSPG2P98160 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 SNORD88.1-201ENST00000408684 91 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 MED6P1-201ENST00000439659 713 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 RNU6-717P-201ENST00000459076 104 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.2□□□□□ -2.22
HSPG2P98160 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.2□□□□□ -2.22
HSPG2P98160 AC087441.2-201ENST00000529141 262 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 AC060766.3-201ENST00000591442 263 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 VN1R79P-201ENST00000593540 513 ntBASIC1.2□□□□□ -2.22
HSPG2P98160 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.2□□□□□ -2.22
HSPG2P98160 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
HSPG2P98160 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HSPG2P98160 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
HSPG2P98160 MUPP-201ENST00000438111 566 ntBASIC1.19□□□□□ -2.22
HSPG2P98160 Z99714.1-201ENST00000450463 807 ntBASIC1.19□□□□□ -2.22
HSPG2P98160 TOMM22P6-201ENST00000465035 409 ntBASIC1.19□□□□□ -2.22
HSPG2P98160 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.19□□□□□ -2.22
HSPG2P98160 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.19□□□□□ -2.22
HSPG2P98160 MIR7153-201ENST00000637758 57 ntBASIC1.19□□□□□ -2.22
HSPG2P98160 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
HSPG2P98160 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
HSPG2P98160 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC1.19□□□□□ -2.22
HSPG2P98160 RNA5SP61-201ENST00000516453 100 ntBASIC1.19□□□□□ -2.22
HSPG2P98160 uc_338.5-201ENST00000611839 155 ntBASIC1.19□□□□□ -2.22
HSPG2P98160 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HSPG2P98160 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.19□□□□□ -2.22
HSPG2P98160 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms