Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.41□□□□□ -2.18
PRKDCP78527 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.41□□□□□ -2.18
PRKDCP78527 AC131902.3-201ENST00000611767 581 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 uc_338.5-201ENST00000611839 155 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 AC244517.12-201ENST00000623581 663 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
PRKDCP78527 AC245100.2-201ENST00000454544 1679 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 MTCO3P31-201ENST00000405526 789 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 AC008173.1-201ENST00000418901 264 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 AC006390.1-201ENST00000508068 283 ntBASIC1.41□□□□□ -2.18
PRKDCP78527 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC1.41□□□□□ -2.18
PRKDCP78527 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC1.41□□□□□ -2.18
PRKDCP78527 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.41□□□□□ -2.18
PRKDCP78527 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.41□□□□□ -2.18
PRKDCP78527 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
PRKDCP78527 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC1.41□□□□□ -2.18
PRKDCP78527 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
PRKDCP78527 RNU1-138P-201ENST00000384093 164 ntBASIC1.4□□□□□ -2.18
PRKDCP78527 AL445685.2-201ENST00000422551 342 ntBASIC1.4□□□□□ -2.18
PRKDCP78527 AC092473.1-201ENST00000441098 221 ntBASIC1.4□□□□□ -2.18
PRKDCP78527 NAMPTP2-201ENST00000505629 1115 ntBASIC1.4□□□□□ -2.18
PRKDCP78527 USP9YP5-201ENST00000511770 630 ntBASIC1.4□□□□□ -2.18
PRKDCP78527 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.18
PRKDCP78527 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
PRKDCP78527 DEFA7P-201ENST00000382676 285 ntBASIC1.4□□□□□ -2.19
PRKDCP78527 RNU6-328P-201ENST00000390887 106 ntBASIC1.4□□□□□ -2.19
PRKDCP78527 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC1.4□□□□□ -2.19
PRKDCP78527 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.4□□□□□ -2.19
PRKDCP78527 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.4□□□□□ -2.19
PRKDCP78527 MTCO3P13-201ENST00000577757 781 ntBASIC1.4□□□□□ -2.19
PRKDCP78527 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.4□□□□□ -2.19
PRKDCP78527 MIR6132-201ENST00000622083 109 ntBASIC1.4□□□□□ -2.19
PRKDCP78527 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.4□□□□□ -2.19
PRKDCP78527 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
PRKDCP78527 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC1.4□□□□□ -2.19
PRKDCP78527 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC1.4□□□□□ -2.19
PRKDCP78527 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.4□□□□□ -2.19
PRKDCP78527 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC1.4□□□□□ -2.19
PRKDCP78527 RNA5SP61-201ENST00000516453 100 ntBASIC1.4□□□□□ -2.19
PRKDCP78527 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.4□□□□□ -2.19
PRKDCP78527 PSMA6P4-201ENST00000603247 718 ntBASIC1.4□□□□□ -2.19
PRKDCP78527 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.4□□□□□ -2.19
PRKDCP78527 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.4□□□□□ -2.19
PRKDCP78527 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.4□□□□□ -2.19
PRKDCP78527 SNORD6-201ENST00000365444 73 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC1.39□□□□□ -2.19
PRKDCP78527 USP9YP8-201ENST00000441913 500 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 IGLVIV-66-1-201ENST00000521832 460 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC1.39□□□□□ -2.19
PRKDCP78527 AP000889.2-201ENST00000532684 490 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC1.39□□□□□ -2.19
PRKDCP78527 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 HMGN2P28-201ENST00000606102 262 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.39□□□□□ -2.19
PRKDCP78527 HMGB1P11-201ENST00000413899 637 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.39□□□□□ -2.19
PRKDCP78527 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.39□□□□□ -2.19
PRKDCP78527 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.39□□□□□ -2.19
PRKDCP78527 MIR5089-201ENST00000580047 84 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AL356280.1-201ENST00000603614 379 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
PRKDCP78527 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC1.39□□□□□ -2.19
PRKDCP78527 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 ZNF542P-204ENST00000482727 1305 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 RNA5SP344-201ENST00000411081 104 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 HMGB1P27-201ENST00000431429 603 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 SDR42E1P3-201ENST00000438345 502 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 Z99714.1-201ENST00000450463 807 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 ATP5EP1-201ENST00000510257 156 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.39□□□□□ -2.19
PRKDCP78527 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.39□□□□□ -2.19
PRKDCP78527 AL160237.3-201ENST00000604114 1013 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 AC006378.2-201ENST00000623178 2476 ntBASIC1.39□□□□□ -2.19
PRKDCP78527 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
PRKDCP78527 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC1.38□□□□□ -2.19
PRKDCP78527 SAR1AP4-201ENST00000429225 591 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 EIF2S2P4-201ENST00000461070 984 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC1.38□□□□□ -2.19
PRKDCP78527 MIR7973-1-201ENST00000614683 76 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 POLHP1-201ENST00000411806 470 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 RBM6-203ENST00000421682 684 ntTSL 2 BASIC1.38□□□□□ -2.19
PRKDCP78527 AC106901.1-201ENST00000425086 698 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AL162388.1-201ENST00000450912 352 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.38□□□□□ -2.19
PRKDCP78527 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 RNA5SP476-201ENST00000516613 103 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.38□□□□□ -2.19
PRKDCP78527 AL139286.1-201ENST00000604465 483 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AC105429.2-201ENST00000610567 517 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC1.38□□□□□ -2.19
PRKDCP78527 PNPT1P2-201ENST00000456768 2050 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 CDC42P1-201ENST00000456658 548 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms