Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.98□□□□□ -1.77
HDAC4P56524 SNORA31-201ENST00000362607 130 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 U3.4-201ENST00000363352 213 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 RNA5SP387-201ENST00000364226 106 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HDAC4P56524 MIR607-201ENST00000385241 96 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 RNU6-821P-201ENST00000390995 107 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 HLFP1-201ENST00000402375 499 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AL138880.1-201ENST00000405824 642 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.98□□□□□ -1.77
HDAC4P56524 MTATP6P27-201ENST00000416987 621 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.98□□□□□ -1.77
HDAC4P56524 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 SNORA71B-202ENST00000439232 272 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 MTND5P14-201ENST00000441481 1267 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 HSPE1P28-201ENST00000443139 211 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC005297.2-201ENST00000450430 606 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 RPS20P24-201ENST00000457473 361 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 RN7SL323P-201ENST00000494712 295 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 AC093809.1-201ENST00000509155 340 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 SCARNA13-201ENST00000516672 275 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 RNU1-45P-201ENST00000517191 141 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 COX6CP8-201ENST00000522620 226 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AL139174.1-201ENST00000531489 886 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.98□□□□□ -1.77
HDAC4P56524 MIR4286-201ENST00000580651 93 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 RSL24D1P11-201ENST00000591045 491 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.98□□□□□ -1.77
HDAC4P56524 BBIP1P1-201ENST00000602999 279 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AL137849.1-201ENST00000604767 169 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC064872.1-201ENST00000604823 1072 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC006329.2-201ENST00000611491 394 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AL357080.1-201ENST00000617394 239 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.98□□□□□ -1.77
HDAC4P56524 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
HDAC4P56524 CR383658.2-201ENST00000547576 1525 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 PABPC1P9-201ENST00000426076 1612 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 AC097714.1-201ENST00000511272 1647 ntBASIC3.98□□□□□ -1.77
HDAC4P56524 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.98□□□□□ -1.77
HDAC4P56524 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.98□□□□□ -1.77
HDAC4P56524 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HDAC4P56524 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HDAC4P56524 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HDAC4P56524 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.97□□□□□ -1.77
HDAC4P56524 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 AC092104.1-201ENST00000497346 1441 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.97□□□□□ -1.77
HDAC4P56524 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 AL079305.1-201ENST00000623159 3008 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 RNU6-989P-201ENST00000362756 107 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 Y_RNA.333-201ENST00000365274 102 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.97□□□□□ -1.77
HDAC4P56524 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.97□□□□□ -1.77
HDAC4P56524 MTCO2P5-201ENST00000422621 426 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.97□□□□□ -1.77
HDAC4P56524 PSMA6P3-201ENST00000428242 164 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 MED14P1-201ENST00000430517 648 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 MTND1P30-201ENST00000441241 901 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 PAXBP1P1-201ENST00000449315 447 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 RPL36AP33-201ENST00000450395 310 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 BX322784.1-201ENST00000455793 1077 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 AC091564.1-201ENST00000464563 479 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 AC092451.1-201ENST00000480211 153 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 AC068724.1-201ENST00000487100 792 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 TRBV12-2-201ENST00000489763 344 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.97□□□□□ -1.77
HDAC4P56524 BTF3L4P4-201ENST00000506381 449 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.97□□□□□ -1.77
HDAC4P56524 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.97□□□□□ -1.77
HDAC4P56524 AC024589.1-201ENST00000512207 263 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.97□□□□□ -1.77
HDAC4P56524 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HDAC4P56524 OR5D17P-201ENST00000531492 978 ntBASIC3.97□□□□□ -1.77
HDAC4P56524 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.97□□□□□ -1.77
HDAC4P56524 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.97□□□□□ -1.77
HDAC4P56524 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.97□□□□□ -1.77
HDAC4P56524 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms