Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC138473.1-201ENST00000605717 526 ntBASIC1.82□□□□□ -2.12
FOXA3P55318 AC067747.1-201ENST00000608026 250 ntBASIC1.82□□□□□ -2.12
FOXA3P55318 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.82□□□□□ -2.12
FOXA3P55318 AC245884.12-201ENST00000615364 59 ntBASIC1.82□□□□□ -2.12
FOXA3P55318 AC084757.4-201ENST00000616350 526 ntBASIC1.82□□□□□ -2.12
FOXA3P55318 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA3P55318 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
FOXA3P55318 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.82□□□□□ -2.12
FOXA3P55318 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
FOXA3P55318 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA3P55318 AC016716.1-201ENST00000265882 708 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXA3P55318 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA3P55318 AL513475.1-201ENST00000406602 315 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXA3P55318 AL512504.1-201ENST00000415494 778 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXA3P55318 AC091390.3-201ENST00000426478 338 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 WARS2P1-201ENST00000429678 537 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC087499.2-201ENST00000432861 149 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA3P55318 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.81□□□□□ -2.12
FOXA3P55318 RPS24P13-201ENST00000442520 397 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AL031659.1-201ENST00000447075 539 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 ZNF736P6Y-201ENST00000447526 1213 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC233982.1-201ENST00000451247 436 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AL139109.1-201ENST00000455491 297 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA3P55318 AL358832.1-201ENST00000497800 389 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC008427.1-201ENST00000503102 655 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA3P55318 FABP5P6-201ENST00000510588 409 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 TTC39CP1-201ENST00000512513 755 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.81□□□□□ -2.12
FOXA3P55318 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA3P55318 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA3P55318 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXA3P55318 AC009127.3-201ENST00000570531 403 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 ISCA1P3-201ENST00000577104 373 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC115989.2-201ENST00000578640 563 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC061975.8-201ENST00000587058 721 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 OR1M4P-201ENST00000589199 287 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC125494.3-201ENST00000602759 455 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC079880.2-201ENST00000603790 1213 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 MIR6840-201ENST00000611937 71 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXA3P55318 CU459211.1-201ENST00000635667 749 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 AC123912.3-201ENST00000600907 1367 ntBASIC1.81□□□□□ -2.12
FOXA3P55318 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA3P55318 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXA3P55318 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
FOXA3P55318 SNORD62.1-201ENST00000362541 86 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 RNU6-461P-201ENST00000364195 107 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 SNORA6-201ENST00000384033 151 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 RNU6-1226P-201ENST00000384317 107 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 RNU6-821P-201ENST00000390995 107 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 U3.29-201ENST00000391296 212 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 UBA52P6-201ENST00000399822 382 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AL356967.1-201ENST00000406305 431 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 RNU4-72P-201ENST00000410754 173 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.8□□□□□ -2.12
FOXA3P55318 RNF19BPX-201ENST00000426224 625 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXA3P55318 ATP5F1P1-201ENST00000433775 569 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.8□□□□□ -2.12
FOXA3P55318 AL445687.1-201ENST00000439946 251 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 PGBD4P3-201ENST00000440731 581 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 IPO7P1-201ENST00000442031 636 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 BX510359.1-201ENST00000456973 237 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 FAM172BP-201ENST00000487497 1089 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA3P55318 GTF2IP9-201ENST00000502460 301 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 RNU6-491P-201ENST00000516099 110 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 AC068339.2-201ENST00000534395 618 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AC126177.3-201ENST00000551839 688 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 CKS1BP1-201ENST00000555221 240 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXA3P55318 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC1.8□□□□□ -2.12
FOXA3P55318 AC025281.1-201ENST00000567026 265 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 MIR3609-201ENST00000582661 80 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AL121917.1-203ENST00000605534 577 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 BX649567.1-201ENST00000642071 1134 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXA3P55318 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXA3P55318 AC016717.2-201ENST00000609089 5141 ntBASIC1.8□□□□□ -2.12
FOXA3P55318 AC069528.2-201ENST00000624849 1991 ntBASIC1.79□□□□□ -2.12
FOXA3P55318 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
FOXA3P55318 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
FOXA3P55318 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXA3P55318 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA3P55318 OFD1P5Y-201ENST00000447585 2590 ntBASIC1.79□□□□□ -2.12
FOXA3P55318 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
FOXA3P55318 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms