Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC092745.2-202ENST00000411880 369 ntBASIC3.38□□□□□ -1.87
MSH6P52701 AC007390.1-201ENST00000415722 356 ntBASIC3.38□□□□□ -1.87
MSH6P52701 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH6P52701 VN1R42P-201ENST00000424651 344 ntBASIC3.38□□□□□ -1.87
MSH6P52701 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.38□□□□□ -1.87
MSH6P52701 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH6P52701 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH6P52701 HMGB1P48-201ENST00000446155 598 ntBASIC3.38□□□□□ -1.87
MSH6P52701 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH6P52701 AC092451.1-201ENST00000480211 153 ntBASIC3.38□□□□□ -1.87
MSH6P52701 RPL36AP51-201ENST00000487216 318 ntBASIC3.38□□□□□ -1.87
MSH6P52701 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSH6P52701 AC110792.2-201ENST00000510278 224 ntBASIC3.38□□□□□ -1.87
MSH6P52701 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH6P52701 HSPE1P18-201ENST00000517602 280 ntBASIC3.38□□□□□ -1.87
MSH6P52701 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.38□□□□□ -1.87
MSH6P52701 AC087272.1-201ENST00000523624 533 ntBASIC3.38□□□□□ -1.87
MSH6P52701 OR4A45P-201ENST00000529954 901 ntBASIC3.38□□□□□ -1.87
MSH6P52701 AC104229.1-201ENST00000561364 255 ntBASIC3.38□□□□□ -1.87
MSH6P52701 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH6P52701 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
MSH6P52701 AL163051.2-201ENST00000618976 735 ntBASIC3.38□□□□□ -1.87
MSH6P52701 MIR1291-201ENST00000627649 87 ntBASIC3.38□□□□□ -1.87
MSH6P52701 MIR6733-201ENST00000635723 61 ntBASIC3.38□□□□□ -1.87
MSH6P52701 AC138649.5-201ENST00000637456 137 ntBASIC3.38□□□□□ -1.87
MSH6P52701 LRRC77P-213ENST00000637727 880 ntBASIC3.38□□□□□ -1.87
MSH6P52701 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
MSH6P52701 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSH6P52701 DCAF13P1-201ENST00000495256 1330 ntBASIC3.37□□□□□ -1.87
MSH6P52701 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH6P52701 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
MSH6P52701 ENSAP3-201ENST00000312710 333 ntBASIC3.37□□□□□ -1.87
MSH6P52701 RNA5SP344-201ENST00000411081 104 ntBASIC3.37□□□□□ -1.87
MSH6P52701 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH6P52701 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.37□□□□□ -1.87
MSH6P52701 COL6A4P2-205ENST00000509855 506 ntBASIC3.37□□□□□ -1.87
MSH6P52701 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH6P52701 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH6P52701 ZNF192P1-203ENST00000565888 810 ntBASIC3.37□□□□□ -1.87
MSH6P52701 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH6P52701 AC113194.1-201ENST00000606037 500 ntBASIC3.37□□□□□ -1.87
MSH6P52701 MIR6864-201ENST00000617935 70 ntBASIC3.37□□□□□ -1.87
MSH6P52701 AC073592.7-201ENST00000623659 507 ntBASIC3.37□□□□□ -1.87
MSH6P52701 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH6P52701 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSH6P52701 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.36□□□□□ -1.87
MSH6P52701 AL353746.1-201ENST00000566293 6881 ntBASIC3.36□□□□□ -1.87
MSH6P52701 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH6P52701 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSH6P52701 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
MSH6P52701 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
MSH6P52701 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
MSH6P52701 GSTA9P-201ENST00000406231 611 ntBASIC3.36□□□□□ -1.87
MSH6P52701 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH6P52701 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSH6P52701 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH6P52701 MTND2P31-201ENST00000512602 616 ntBASIC3.36□□□□□ -1.87
MSH6P52701 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH6P52701 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH6P52701 AC139103.1-201ENST00000534696 1030 ntBASIC3.36□□□□□ -1.87
MSH6P52701 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH6P52701 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH6P52701 AC012254.4-201ENST00000588843 273 ntBASIC3.36□□□□□ -1.87
MSH6P52701 AP003117.2-201ENST00000606010 545 ntBASIC3.36□□□□□ -1.87
MSH6P52701 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.36□□□□□ -1.87
MSH6P52701 AL445493.3-201ENST00000619568 477 ntBASIC3.36□□□□□ -1.87
MSH6P52701 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
MSH6P52701 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.35□□□□□ -1.87
MSH6P52701 AF127577.6-201ENST00000623352 2191 ntBASIC3.35□□□□□ -1.87
MSH6P52701 SEC63P2-201ENST00000503863 1939 ntBASIC3.35□□□□□ -1.87
MSH6P52701 AL356292.1-201ENST00000283110 373 ntBASIC3.35□□□□□ -1.87
MSH6P52701 RNU2-21P-201ENST00000410368 188 ntBASIC3.35□□□□□ -1.87
MSH6P52701 RPL23AP36-201ENST00000413895 458 ntBASIC3.35□□□□□ -1.87
MSH6P52701 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH6P52701 AL158050.1-201ENST00000416077 457 ntBASIC3.35□□□□□ -1.87
MSH6P52701 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.35□□□□□ -1.87
MSH6P52701 AC093422.3-201ENST00000428506 305 ntBASIC3.35□□□□□ -1.87
MSH6P52701 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH6P52701 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH6P52701 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH6P52701 AL035407.2-201ENST00000454090 378 ntBASIC3.35□□□□□ -1.87
MSH6P52701 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.35□□□□□ -1.87
MSH6P52701 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH6P52701 OSBPL9P3-201ENST00000534523 595 ntBASIC3.35□□□□□ -1.87
MSH6P52701 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH6P52701 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.35□□□□□ -1.87
MSH6P52701 AC097460.3-201ENST00000623099 442 ntBASIC3.35□□□□□ -1.87
MSH6P52701 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH6P52701 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
MSH6P52701 AC008432.1-201ENST00000615912 1320 ntBASIC3.35□□□□□ -1.87
MSH6P52701 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
MSH6P52701 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
MSH6P52701 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
MSH6P52701 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
MSH6P52701 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.34□□□□□ -1.88
MSH6P52701 MIR1287-201ENST00000408492 90 ntBASIC3.34□□□□□ -1.88
MSH6P52701 PRELID3BP11-201ENST00000414230 479 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.34□□□□□ -1.88
MSH6P52701 MTATP6P11-201ENST00000428071 670 ntBASIC3.34□□□□□ -1.88
MSH6P52701 AL590762.3-201ENST00000436372 640 ntBASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms