Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.27□□□□□ -1.57
LIG3P49916 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
LIG3P49916 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
LIG3P49916 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
LIG3P49916 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
LIG3P49916 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 Y_RNA.132-201ENST00000363421 102 ntBASIC5.27□□□□□ -1.57
LIG3P49916 U8.4-201ENST00000363626 134 ntBASIC5.27□□□□□ -1.57
LIG3P49916 SNORA70-201ENST00000384436 135 ntBASIC5.27□□□□□ -1.57
LIG3P49916 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 RNA5SP56-201ENST00000410277 118 ntBASIC5.27□□□□□ -1.57
LIG3P49916 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG3P49916 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG3P49916 RPL7P46-201ENST00000425129 740 ntBASIC5.27□□□□□ -1.57
LIG3P49916 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 RPS27AP12-201ENST00000429552 465 ntBASIC5.27□□□□□ -1.57
LIG3P49916 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 KCTD9P3-201ENST00000434597 1169 ntBASIC5.27□□□□□ -1.57
LIG3P49916 HMGB3P11-201ENST00000440127 604 ntBASIC5.27□□□□□ -1.57
LIG3P49916 HMGB3P21-201ENST00000452483 547 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC5.27□□□□□ -1.57
LIG3P49916 RN7SL189P-201ENST00000468631 289 ntBASIC5.27□□□□□ -1.57
LIG3P49916 VN1R17P-201ENST00000472048 1090 ntBASIC5.27□□□□□ -1.57
LIG3P49916 RPL23AP55-201ENST00000498163 452 ntBASIC5.27□□□□□ -1.57
LIG3P49916 CCDC34P1-201ENST00000507441 517 ntBASIC5.27□□□□□ -1.57
LIG3P49916 TRMT10BP1-201ENST00000519377 943 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC134698.5-201ENST00000519444 336 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AP000889.2-201ENST00000532684 490 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG3P49916 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.27□□□□□ -1.57
LIG3P49916 AC024940.3-201ENST00000538551 316 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.27□□□□□ -1.57
LIG3P49916 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.27□□□□□ -1.57
LIG3P49916 MIR5583-1-201ENST00000580941 59 ntBASIC5.27□□□□□ -1.57
LIG3P49916 RNF138P2-201ENST00000603490 592 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.6-201ENST00000603753 252 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.11-201ENST00000604059 253 ntBASIC5.27□□□□□ -1.57
LIG3P49916 APOOP1-201ENST00000604695 592 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC008162.1-201ENST00000604718 254 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.1-201ENST00000604752 252 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.5-201ENST00000605253 252 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.12-201ENST00000605291 253 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.8-201ENST00000605353 252 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL670379.7-201ENST00000605823 252 ntBASIC5.27□□□□□ -1.57
LIG3P49916 RPSAP73-201ENST00000614820 330 ntBASIC5.27□□□□□ -1.57
LIG3P49916 SNHG22-203ENST00000617833 660 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC092747.4-201ENST00000620519 1861 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AL357559.1-201ENST00000622228 274 ntBASIC5.27□□□□□ -1.57
LIG3P49916 AC121333.1-201ENST00000567488 2709 ntBASIC5.27□□□□□ -1.57
LIG3P49916 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG3P49916 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
LIG3P49916 AC012618.3-205ENST00000637896 1496 ntBASIC5.26□□□□□ -1.57
LIG3P49916 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 AC011155.1-201ENST00000316512 456 ntBASIC5.26□□□□□ -1.57
LIG3P49916 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 RNA5SP507-201ENST00000363603 121 ntBASIC5.26□□□□□ -1.57
LIG3P49916 SNORD113-7-201ENST00000363762 77 ntBASIC5.26□□□□□ -1.57
LIG3P49916 RNU6-82P-201ENST00000363970 107 ntBASIC5.26□□□□□ -1.57
LIG3P49916 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 MIR600-201ENST00000385007 98 ntBASIC5.26□□□□□ -1.57
LIG3P49916 MIR765-201ENST00000390226 114 ntBASIC5.26□□□□□ -1.57
LIG3P49916 SOD2P1-201ENST00000396543 562 ntBASIC5.26□□□□□ -1.57
LIG3P49916 CYB5AP4-201ENST00000396692 399 ntBASIC5.26□□□□□ -1.57
LIG3P49916 UBE2V1P2-201ENST00000397758 440 ntBASIC5.26□□□□□ -1.57
LIG3P49916 RN7SKP126-201ENST00000411143 300 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC092447.6-201ENST00000414578 210 ntBASIC5.26□□□□□ -1.57
LIG3P49916 RAC1P6-201ENST00000423911 575 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.26□□□□□ -1.57
LIG3P49916 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG3P49916 AC107399.1-201ENST00000451226 265 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.26□□□□□ -1.57
LIG3P49916 CYCSP34-201ENST00000458172 304 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC130509.1-201ENST00000464158 433 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC012181.1-201ENST00000479895 423 ntBASIC5.26□□□□□ -1.57
LIG3P49916 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG3P49916 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 AC108078.2-201ENST00000510750 236 ntBASIC5.26□□□□□ -1.57
LIG3P49916 Y_RNA.682-201ENST00000516457 100 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG3P49916 AC012400.1-201ENST00000518452 381 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG3P49916 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.26□□□□□ -1.57
LIG3P49916 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.26□□□□□ -1.57
LIG3P49916 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG3P49916 MIR3171-201ENST00000584270 74 ntBASIC5.26□□□□□ -1.57
LIG3P49916 MIR3942-201ENST00000585264 109 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC006504.6-201ENST00000590142 199 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC067852.4-201ENST00000590314 478 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AL162431.4-201ENST00000604674 411 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms