Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL161637.1-201ENST00000622380 412 ntBASIC3.79□□□□□ -1.8
SOX2P48431 AC009161.2-201ENST00000624626 138 ntBASIC3.79□□□□□ -1.8
SOX2P48431 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX2P48431 AC105074.1-201ENST00000623380 3095 ntBASIC3.79□□□□□ -1.8
SOX2P48431 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SOX2P48431 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SOX2P48431 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SOX2P48431 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SOX2P48431 AC138915.3-201ENST00000562908 1389 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC090229.1-201ENST00000590983 1609 ntBASIC3.78□□□□□ -1.8
SOX2P48431 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX2P48431 OR1S2-201ENST00000302592 978 ntBASIC3.78□□□□□ -1.8
SOX2P48431 RNU6-1097P-201ENST00000363586 107 ntBASIC3.78□□□□□ -1.8
SOX2P48431 Y_RNA.159-201ENST00000363674 87 ntBASIC3.78□□□□□ -1.8
SOX2P48431 RNU6-108P-201ENST00000365558 107 ntBASIC3.78□□□□□ -1.8
SOX2P48431 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC097374.1-203ENST00000400783 485 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.78□□□□□ -1.8
SOX2P48431 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.78□□□□□ -1.8
SOX2P48431 BRWD1P3-201ENST00000428816 390 ntBASIC3.78□□□□□ -1.8
SOX2P48431 NEK4P1-201ENST00000433383 879 ntBASIC3.78□□□□□ -1.8
SOX2P48431 GPR143P-201ENST00000434155 205 ntBASIC3.78□□□□□ -1.8
SOX2P48431 MRPS18BP2-201ENST00000434310 759 ntBASIC3.78□□□□□ -1.8
SOX2P48431 PSMD10P3-201ENST00000437000 448 ntBASIC3.78□□□□□ -1.8
SOX2P48431 MTCO3P18-201ENST00000440206 761 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AL353748.1-201ENST00000440753 474 ntBASIC3.78□□□□□ -1.8
SOX2P48431 PPIAP3-201ENST00000450588 505 ntBASIC3.78□□□□□ -1.8
SOX2P48431 RNU7-59P-201ENST00000459101 61 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC020893.1-201ENST00000502452 580 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX2P48431 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX2P48431 AC017037.1-201ENST00000508460 471 ntBASIC3.78□□□□□ -1.8
SOX2P48431 MTND1P35-201ENST00000526739 508 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX2P48431 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX2P48431 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX2P48431 APPL2-203ENST00000546731 684 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX2P48431 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX2P48431 OR4T1P-201ENST00000554933 911 ntBASIC3.78□□□□□ -1.8
SOX2P48431 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX2P48431 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX2P48431 AC091042.1-201ENST00000579213 173 ntBASIC3.78□□□□□ -1.8
SOX2P48431 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.78□□□□□ -1.8
SOX2P48431 AP001330.5-201ENST00000607176 411 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC004067.1-201ENST00000608733 700 ntBASIC3.78□□□□□ -1.8
SOX2P48431 AC099654.14-201ENST00000638599 341 ntBASIC3.78□□□□□ -1.8
SOX2P48431 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SOX2P48431 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX2P48431 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX2P48431 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX2P48431 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX2P48431 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX2P48431 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX2P48431 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
SOX2P48431 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX2P48431 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX2P48431 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX2P48431 Y_RNA.89-201ENST00000363031 102 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RNU6-1322P-201ENST00000364309 107 ntBASIC3.77□□□□□ -1.81
SOX2P48431 Y_RNA.295-201ENST00000364918 102 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RNU1-39P-201ENST00000383897 165 ntBASIC3.77□□□□□ -1.81
SOX2P48431 Y_RNA.390-201ENST00000383932 102 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RNU6-483P-201ENST00000384088 108 ntBASIC3.77□□□□□ -1.81
SOX2P48431 CYB5AP4-201ENST00000396692 399 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RNU6-516P-201ENST00000411381 104 ntBASIC3.77□□□□□ -1.81
SOX2P48431 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX2P48431 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX2P48431 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX2P48431 OR1AA1P-201ENST00000419597 916 ntBASIC3.77□□□□□ -1.81
SOX2P48431 UQCRBP1-201ENST00000421129 336 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RBMY1KP-201ENST00000423480 476 ntBASIC3.77□□□□□ -1.81
SOX2P48431 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX2P48431 BTF3P10-201ENST00000433415 495 ntBASIC3.77□□□□□ -1.81
SOX2P48431 HMGB1P31-201ENST00000437242 427 ntBASIC3.77□□□□□ -1.81
SOX2P48431 HMGB3P12-201ENST00000438745 556 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RPL21P89-201ENST00000444021 467 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX2P48431 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX2P48431 NANOGP10-201ENST00000453325 895 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX2P48431 AC022364.2-201ENST00000457963 554 ntBASIC3.77□□□□□ -1.81
SOX2P48431 snoU13.3-201ENST00000459441 104 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RN7SL585P-201ENST00000470538 280 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RPL12P20-201ENST00000475538 479 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RN7SL177P-201ENST00000476596 299 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC093270.2-201ENST00000486157 792 ntBASIC3.77□□□□□ -1.81
SOX2P48431 RN7SL812P-201ENST00000493791 279 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC025445.1-201ENST00000502728 300 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX2P48431 AC025554.1-201ENST00000505641 188 ntBASIC3.77□□□□□ -1.81
SOX2P48431 OR51K1P-201ENST00000510214 950 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC074344.1-201ENST00000512823 224 ntBASIC3.77□□□□□ -1.81
SOX2P48431 OR7H2P-201ENST00000513483 306 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX2P48431 RNU6-1220P-201ENST00000517126 108 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX2P48431 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX2P48431 AC011979.2-201ENST00000527568 352 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AP000857.1-201ENST00000532151 543 ntBASIC3.77□□□□□ -1.81
SOX2P48431 AL133271.1-201ENST00000538229 291 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms