Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC011460.1-201ENST00000636268 1834 ntBASIC3.21□□□□□ -1.89
CDX1P47902 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.21□□□□□ -1.89
CDX1P47902 AC116667.1-201ENST00000604855 2072 ntBASIC3.21□□□□□ -1.89
CDX1P47902 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDX1P47902 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.21□□□□□ -1.9
CDX1P47902 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
CDX1P47902 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.21□□□□□ -1.9
CDX1P47902 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDX1P47902 RNU5A-1-201ENST00000362698 116 ntBASIC3.21□□□□□ -1.9
CDX1P47902 RNU6-76P-201ENST00000384060 104 ntBASIC3.21□□□□□ -1.9
CDX1P47902 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CDX1P47902 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CDX1P47902 PPIAP31-201ENST00000405422 495 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.21□□□□□ -1.9
CDX1P47902 MTND1P21-201ENST00000412991 285 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.21□□□□□ -1.9
CDX1P47902 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.21□□□□□ -1.9
CDX1P47902 RPL27AP8-201ENST00000424277 446 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.21□□□□□ -1.9
CDX1P47902 RPL7P36-201ENST00000444633 681 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.21□□□□□ -1.9
CDX1P47902 CDC27P1-201ENST00000445384 715 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL133217.1-201ENST00000450980 425 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC098826.2-201ENST00000452011 651 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.21□□□□□ -1.9
CDX1P47902 RPL36AP13-201ENST00000457490 317 ntBASIC3.21□□□□□ -1.9
CDX1P47902 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CDX1P47902 PHBP14-201ENST00000512887 367 ntBASIC3.21□□□□□ -1.9
CDX1P47902 MRPS33P3-201ENST00000513456 322 ntBASIC3.21□□□□□ -1.9
CDX1P47902 RNU6-798P-201ENST00000516912 103 ntBASIC3.21□□□□□ -1.9
CDX1P47902 RN7SKP60-201ENST00000516985 239 ntBASIC3.21□□□□□ -1.9
CDX1P47902 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.21□□□□□ -1.9
CDX1P47902 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.21□□□□□ -1.9
CDX1P47902 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.21□□□□□ -1.9
CDX1P47902 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.21□□□□□ -1.9
CDX1P47902 AC007599.1-201ENST00000568688 1174 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.21□□□□□ -1.9
CDX1P47902 VN1R85P-201ENST00000601587 426 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC067959.1-201ENST00000604334 379 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC112187.2-201ENST00000604345 283 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC114878.2-201ENST00000604863 1251 ntBASIC3.21□□□□□ -1.9
CDX1P47902 MIR6867-201ENST00000610636 67 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.21□□□□□ -1.9
CDX1P47902 AC120349.3-201ENST00000624377 529 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC097520.1-201ENST00000624435 385 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AP005264.7-201ENST00000625003 745 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL159972.1-201ENST00000625150 448 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC092192.1-201ENST00000633154 1018 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL773545.4-201ENST00000637262 310 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AC244258.1-201ENST00000637553 1071 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AL513478.4-201ENST00000641636 310 ntBASIC3.21□□□□□ -1.9
CDX1P47902 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDX1P47902 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDX1P47902 AC009902.3-201ENST00000606235 2172 ntBASIC3.21□□□□□ -1.9
CDX1P47902 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDX1P47902 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDX1P47902 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDX1P47902 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CDX1P47902 AC092125.1-201ENST00000562568 1995 ntBASIC3.2□□□□□ -1.9
CDX1P47902 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CDX1P47902 RNA5SP130-201ENST00000364431 114 ntBASIC3.2□□□□□ -1.9
CDX1P47902 RNA5SP515-201ENST00000364570 118 ntBASIC3.2□□□□□ -1.9
CDX1P47902 RNA5SP479-201ENST00000364858 117 ntBASIC3.2□□□□□ -1.9
CDX1P47902 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 RNU6-769P-201ENST00000384407 104 ntBASIC3.2□□□□□ -1.9
CDX1P47902 MIR493-201ENST00000385254 89 ntBASIC3.2□□□□□ -1.9
CDX1P47902 RN7SKP53-201ENST00000411337 315 ntBASIC3.2□□□□□ -1.9
CDX1P47902 TPMTP3-201ENST00000411928 735 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.2□□□□□ -1.9
CDX1P47902 UBE2D3P2-201ENST00000424409 445 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 UBE2D3P1-201ENST00000436669 444 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 SSXP4-201ENST00000451349 245 ntBASIC3.2□□□□□ -1.9
CDX1P47902 DNAJC19P1-201ENST00000455312 319 ntBASIC3.2□□□□□ -1.9
CDX1P47902 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AP1S2P1-201ENST00000457344 379 ntBASIC3.2□□□□□ -1.9
CDX1P47902 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CDX1P47902 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.2□□□□□ -1.9
CDX1P47902 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.2□□□□□ -1.9
CDX1P47902 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.2□□□□□ -1.9
CDX1P47902 SNORA70.16-201ENST00000516390 95 ntBASIC3.2□□□□□ -1.9
CDX1P47902 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.2□□□□□ -1.9
CDX1P47902 RNU6-232P-201ENST00000517144 64 ntBASIC3.2□□□□□ -1.9
CDX1P47902 ERHP1-201ENST00000523006 310 ntBASIC3.2□□□□□ -1.9
CDX1P47902 FAM60DP-201ENST00000524174 632 ntBASIC3.2□□□□□ -1.9
CDX1P47902 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.2□□□□□ -1.9
CDX1P47902 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.2□□□□□ -1.9
CDX1P47902 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.2□□□□□ -1.9
CDX1P47902 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.2□□□□□ -1.9
CDX1P47902 AL133271.1-201ENST00000538229 291 ntBASIC3.2□□□□□ -1.9
CDX1P47902 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CDX1P47902 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.2□□□□□ -1.9
CDX1P47902 MIR4286-201ENST00000580651 93 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AC105224.1-201ENST00000587055 421 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AC093227.2-201ENST00000589357 285 ntBASIC3.2□□□□□ -1.9
CDX1P47902 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms