Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GDI2P2-201ENST00000445131 608 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AP000936.2-201ENST00000447151 681 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AC006480.1-201ENST00000449887 378 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC023424.2-201ENST00000493479 777 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AC012170.1-201ENST00000495139 359 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AL139099.1-201ENST00000497398 403 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC079140.3-201ENST00000511111 550 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 FTH1P9-201ENST00000513251 355 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 SNORA70.14-201ENST00000516205 110 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 RN7SKP209-201ENST00000516888 304 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 RNU6-714P-201ENST00000516963 103 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 AC022695.1-201ENST00000522089 237 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 SETP7-201ENST00000552169 453 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.95□□□□□ -1.78
PTPN9P43378 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC005771.1-201ENST00000585581 349 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 TPMTP1-201ENST00000592307 737 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.95□□□□□ -1.78
PTPN9P43378 AC112230.1-201ENST00000604342 547 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 IGHV3-29-201ENST00000604817 344 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AL451064.1-201ENST00000607718 471 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AC091905.1-201ENST00000624400 311 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.94□□□□□ -1.78
PTPN9P43378 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 RNU6-837P-201ENST00000391056 108 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AL356421.1-201ENST00000403255 413 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.94□□□□□ -1.78
PTPN9P43378 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 AC127526.1-201ENST00000417526 366 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AIMP1P1-201ENST00000418670 937 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.94□□□□□ -1.78
PTPN9P43378 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.94□□□□□ -1.78
PTPN9P43378 AC017083.1-201ENST00000428093 483 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.94□□□□□ -1.78
PTPN9P43378 MTCYBP45-201ENST00000435243 565 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC108734.1-201ENST00000439549 399 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC092641.1-201ENST00000440229 772 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 RPL21P133-201ENST00000443666 476 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 USP9YP29-201ENST00000445112 563 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 AL353691.1-201ENST00000451332 387 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 HMGB1P25-201ENST00000468402 607 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.94□□□□□ -1.78
PTPN9P43378 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.94□□□□□ -1.78
PTPN9P43378 ARL2BPP4-201ENST00000506854 471 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.94□□□□□ -1.78
PTPN9P43378 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.94□□□□□ -1.78
PTPN9P43378 MIR5697-201ENST00000578045 78 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC087499.8-201ENST00000578406 226 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC022146.1-201ENST00000595307 847 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC004853.1-201ENST00000604902 698 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC138749.5-201ENST00000611461 208 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC005344.1-201ENST00000613391 459 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC116165.2-201ENST00000616705 206 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC108479.2-201ENST00000617314 601 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.94□□□□□ -1.78
PTPN9P43378 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
PTPN9P43378 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 CCT4P2-201ENST00000233836 1548 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 AC092104.1-201ENST00000497346 1441 ntBASIC3.94□□□□□ -1.78
PTPN9P43378 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTPN9P43378 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.93□□□□□ -1.78
PTPN9P43378 NCAPGP1-201ENST00000505112 1814 ntBASIC3.93□□□□□ -1.78
PTPN9P43378 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
PTPN9P43378 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PTPN9P43378 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
PTPN9P43378 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTPN9P43378 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
PTPN9P43378 Y_RNA.559-201ENST00000384686 107 ntBASIC3.93□□□□□ -1.78
PTPN9P43378 MIR30B-201ENST00000384850 88 ntBASIC3.93□□□□□ -1.78
PTPN9P43378 RNA5SP424-201ENST00000390988 115 ntBASIC3.93□□□□□ -1.78
PTPN9P43378 AL663109.1-201ENST00000411498 844 ntBASIC3.93□□□□□ -1.78
PTPN9P43378 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.93□□□□□ -1.78
PTPN9P43378 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms