Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 DUXAP2-201ENST00000519198 589 ntBASIC3.3□□□□□ -1.88
SOX3P41225 OR4R3P-201ENST00000525084 838 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.3□□□□□ -1.88
SOX3P41225 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.3□□□□□ -1.88
SOX3P41225 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX3P41225 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.3□□□□□ -1.88
SOX3P41225 TGIF1P1-201ENST00000558095 802 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC011260.1-201ENST00000578420 472 ntBASIC3.3□□□□□ -1.88
SOX3P41225 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
SOX3P41225 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX3P41225 AC024220.1-201ENST00000603675 484 ntBASIC3.3□□□□□ -1.88
SOX3P41225 IGHV3-29-201ENST00000604817 344 ntBASIC3.3□□□□□ -1.88
SOX3P41225 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AL390208.1-201ENST00000605885 644 ntBASIC3.3□□□□□ -1.88
SOX3P41225 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX3P41225 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX3P41225 AC012314.7-201ENST00000619693 93 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC244100.1-202ENST00000621554 382 ntBASIC3.3□□□□□ -1.88
SOX3P41225 AC091925.2-201ENST00000625059 256 ntBASIC3.3□□□□□ -1.88
SOX3P41225 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX3P41225 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX3P41225 AL365440.1-201ENST00000436135 2167 ntBASIC3.29□□□□□ -1.88
SOX3P41225 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.29□□□□□ -1.88
SOX3P41225 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.29□□□□□ -1.88
SOX3P41225 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX3P41225 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SOX3P41225 RNA5SP42-201ENST00000364278 115 ntBASIC3.29□□□□□ -1.88
SOX3P41225 RNU6-343P-201ENST00000364709 104 ntBASIC3.29□□□□□ -1.88
SOX3P41225 Y_RNA.560-201ENST00000384689 102 ntBASIC3.29□□□□□ -1.88
SOX3P41225 RNU6-821P-201ENST00000390995 107 ntBASIC3.29□□□□□ -1.88
SOX3P41225 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 MTHFD2P2-201ENST00000407725 247 ntBASIC3.29□□□□□ -1.88
SOX3P41225 RNU2-15P-201ENST00000410692 191 ntBASIC3.29□□□□□ -1.88
SOX3P41225 RNU6-920P-201ENST00000410926 92 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX3P41225 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 AL159169.1-201ENST00000421119 127 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 AC019178.2-201ENST00000423595 505 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 HMGB3P8-201ENST00000449709 577 ntBASIC3.29□□□□□ -1.88
SOX3P41225 BX322784.1-201ENST00000455793 1077 ntBASIC3.29□□□□□ -1.88
SOX3P41225 RNU7-170P-201ENST00000459303 61 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.29□□□□□ -1.88
SOX3P41225 MTND3P7-201ENST00000474435 343 ntBASIC3.29□□□□□ -1.88
SOX3P41225 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.29□□□□□ -1.88
SOX3P41225 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SOX3P41225 AC093809.1-201ENST00000509155 340 ntBASIC3.29□□□□□ -1.88
SOX3P41225 RNU6-27P-201ENST00000516146 107 ntBASIC3.29□□□□□ -1.88
SOX3P41225 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX3P41225 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 AC103843.2-201ENST00000530523 682 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.29□□□□□ -1.88
SOX3P41225 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX3P41225 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX3P41225 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.29□□□□□ -1.88
SOX3P41225 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX3P41225 MIR3915-201ENST00000578518 97 ntBASIC3.29□□□□□ -1.88
SOX3P41225 WISP1-OT1-201ENST00000602893 642 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC092354.2-201ENST00000607786 514 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC006329.2-201ENST00000611491 394 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC019176.2-201ENST00000611579 315 ntBASIC3.29□□□□□ -1.88
SOX3P41225 U4.6-201ENST00000621618 127 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC040168.1-201ENST00000623594 991 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AF246928.1-201ENST00000623768 87 ntBASIC3.29□□□□□ -1.88
SOX3P41225 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.29□□□□□ -1.88
SOX3P41225 AL392088.2-201ENST00000637607 285 ntBASIC3.29□□□□□ -1.88
SOX3P41225 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SOX3P41225 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 MIR30E-201ENST00000362104 92 ntBASIC3.28□□□□□ -1.88
SOX3P41225 RNU6-263P-201ENST00000363811 107 ntBASIC3.28□□□□□ -1.88
SOX3P41225 RNU6-777P-201ENST00000364265 104 ntBASIC3.28□□□□□ -1.88
SOX3P41225 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX3P41225 SNORD51-201ENST00000384320 80 ntBASIC3.28□□□□□ -1.88
SOX3P41225 RNU6-55P-201ENST00000411092 107 ntBASIC3.28□□□□□ -1.88
SOX3P41225 RNU6-954P-201ENST00000411355 107 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 RPL31P12-201ENST00000422587 358 ntBASIC3.28□□□□□ -1.88
SOX3P41225 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.28□□□□□ -1.88
SOX3P41225 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms