Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 VWA8P1-201ENST00000510889 176 ntBASIC1.94□□□□□ -2.1
VCANP13611 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC1.94□□□□□ -2.1
VCANP13611 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
VCANP13611 HPVC1-201ENST00000629899 1198 ntBASIC1.94□□□□□ -2.1
VCANP13611 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
VCANP13611 HMGB1P11-201ENST00000413899 637 ntBASIC1.94□□□□□ -2.1
VCANP13611 ARPC3P1-201ENST00000437218 533 ntBASIC1.94□□□□□ -2.1
VCANP13611 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC1.94□□□□□ -2.1
VCANP13611 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.94□□□□□ -2.1
VCANP13611 AC105429.2-201ENST00000610567 517 ntBASIC1.94□□□□□ -2.1
VCANP13611 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.94□□□□□ -2.1
VCANP13611 AC084035.1-201ENST00000634543 607 ntBASIC1.94□□□□□ -2.1
VCANP13611 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
VCANP13611 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.93□□□□□ -2.1
VCANP13611 RNU6-882P-201ENST00000391025 103 ntBASIC1.93□□□□□ -2.1
VCANP13611 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.93□□□□□ -2.1
VCANP13611 LAMTOR5P1-201ENST00000444290 270 ntBASIC1.93□□□□□ -2.1
VCANP13611 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.93□□□□□ -2.1
VCANP13611 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.93□□□□□ -2.1
VCANP13611 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.93□□□□□ -2.1
VCANP13611 POU5F1P7-201ENST00000508759 541 ntBASIC1.93□□□□□ -2.1
VCANP13611 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.93□□□□□ -2.1
VCANP13611 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC1.93□□□□□ -2.1
VCANP13611 AL645939.4-201ENST00000604495 135 ntBASIC1.93□□□□□ -2.1
VCANP13611 AC073387.2-201ENST00000604797 784 ntBASIC1.93□□□□□ -2.1
VCANP13611 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
VCANP13611 AC103988.1-201ENST00000566382 2177 ntBASIC1.93□□□□□ -2.1
VCANP13611 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
VCANP13611 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
VCANP13611 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
VCANP13611 MIR1294-201ENST00000408503 142 ntBASIC1.93□□□□□ -2.1
VCANP13611 AC245517.2-201ENST00000442890 346 ntBASIC1.93□□□□□ -2.1
VCANP13611 AL137100.2-201ENST00000555786 315 ntBASIC1.93□□□□□ -2.1
VCANP13611 AC103987.3-201ENST00000582071 292 ntBASIC1.93□□□□□ -2.1
VCANP13611 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC1.93□□□□□ -2.1
VCANP13611 AC010678.1-201ENST00000614118 713 ntBASIC1.93□□□□□ -2.1
VCANP13611 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VCANP13611 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
VCANP13611 ANKRD62P1-201ENST00000434304 1623 ntBASIC1.92□□□□□ -2.1
VCANP13611 SNORA51.12-201ENST00000384448 134 ntBASIC1.92□□□□□ -2.1
VCANP13611 RPS29P1-201ENST00000465274 159 ntBASIC1.92□□□□□ -2.1
VCANP13611 SNORA25.15-201ENST00000516487 89 ntBASIC1.92□□□□□ -2.1
VCANP13611 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.92□□□□□ -2.1
VCANP13611 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VCANP13611 OR4G1P-203ENST00000641984 1631 ntBASIC1.92□□□□□ -2.1
VCANP13611 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC1.92□□□□□ -2.1
VCANP13611 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
VCANP13611 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.92□□□□□ -2.1
VCANP13611 RNU1-139P-201ENST00000391307 165 ntBASIC1.92□□□□□ -2.1
VCANP13611 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.92□□□□□ -2.1
VCANP13611 TRIAP1P1-201ENST00000427062 225 ntBASIC1.92□□□□□ -2.1
VCANP13611 RNU2-58P-201ENST00000516403 183 ntBASIC1.92□□□□□ -2.1
VCANP13611 PTP4A1P6-201ENST00000531034 478 ntBASIC1.92□□□□□ -2.1
VCANP13611 MIR5089-201ENST00000580047 84 ntBASIC1.92□□□□□ -2.1
VCANP13611 AL356575.1-201ENST00000603008 283 ntBASIC1.92□□□□□ -2.1
VCANP13611 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.92□□□□□ -2.1
VCANP13611 RPL23AP61-201ENST00000623642 466 ntBASIC1.92□□□□□ -2.1
VCANP13611 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VCANP13611 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
VCANP13611 RNU6-1080P-201ENST00000383982 107 ntBASIC1.92□□□□□ -2.1
VCANP13611 SNORA48.3-201ENST00000391081 134 ntBASIC1.92□□□□□ -2.1
VCANP13611 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.92□□□□□ -2.1
VCANP13611 POLHP1-201ENST00000411806 470 ntBASIC1.92□□□□□ -2.1
VCANP13611 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VCANP13611 AL359273.1-201ENST00000510918 627 ntBASIC1.92□□□□□ -2.1
VCANP13611 AP000889.2-201ENST00000532684 490 ntBASIC1.92□□□□□ -2.1
VCANP13611 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC1.92□□□□□ -2.1
VCANP13611 AC078899.5-201ENST00000612475 178 ntBASIC1.92□□□□□ -2.1
VCANP13611 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.92□□□□□ -2.1
VCANP13611 AC091895.1-201ENST00000624494 256 ntBASIC1.92□□□□□ -2.1
VCANP13611 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
VCANP13611 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.91□□□□□ -2.1
VCANP13611 MTCO1P22-201ENST00000604619 1360 ntBASIC1.91□□□□□ -2.1
VCANP13611 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
VCANP13611 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.91□□□□□ -2.1
VCANP13611 AC091544.1-201ENST00000484702 348 ntBASIC1.91□□□□□ -2.1
VCANP13611 PDCL2P2-201ENST00000533651 189 ntBASIC1.91□□□□□ -2.1
VCANP13611 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
VCANP13611 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.91□□□□□ -2.1
VCANP13611 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC1.91□□□□□ -2.1
VCANP13611 PAICSP7-201ENST00000419829 962 ntBASIC1.91□□□□□ -2.1
VCANP13611 SDR42E1P3-201ENST00000438345 502 ntBASIC1.91□□□□□ -2.1
VCANP13611 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.91□□□□□ -2.1
VCANP13611 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.91□□□□□ -2.1
VCANP13611 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.91□□□□□ -2.1
VCANP13611 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
VCANP13611 FTH1P12-201ENST00000432137 551 ntBASIC1.9□□□□□ -2.1
VCANP13611 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.9□□□□□ -2.1
VCANP13611 AC108078.1-201ENST00000508073 725 ntBASIC1.9□□□□□ -2.1
VCANP13611 AC092851.1-201ENST00000535964 478 ntBASIC1.9□□□□□ -2.1
VCANP13611 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.9□□□□□ -2.1
VCANP13611 AC025946.2-201ENST00000603398 234 ntBASIC1.9□□□□□ -2.1
VCANP13611 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
VCANP13611 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC1.9□□□□□ -2.11
VCANP13611 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.9□□□□□ -2.11
VCANP13611 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.9□□□□□ -2.11
VCANP13611 PROS2P-201ENST00000474651 1951 ntBASIC1.9□□□□□ -2.11
VCANP13611 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC1.9□□□□□ -2.11
VCANP13611 BNIP3P2-201ENST00000441221 577 ntBASIC1.9□□□□□ -2.11
VCANP13611 AC092185.1-201ENST00000491371 97 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms