Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.01□□□□□ -2.09
COL6A3P12111 SRIP3-201ENST00000413200 219 ntBASIC2.01□□□□□ -2.09
COL6A3P12111 EXTL2P1-201ENST00000446218 416 ntBASIC2.01□□□□□ -2.09
COL6A3P12111 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.01□□□□□ -2.09
COL6A3P12111 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.01□□□□□ -2.09
COL6A3P12111 AC244517.12-201ENST00000623581 663 ntBASIC2.01□□□□□ -2.09
COL6A3P12111 PNPT1P2-201ENST00000456768 2050 ntBASIC2.01□□□□□ -2.09
COL6A3P12111 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
COL6A3P12111 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
COL6A3P12111 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2□□□□□ -2.09
COL6A3P12111 DEFB109C-201ENST00000382575 264 ntBASIC2□□□□□ -2.09
COL6A3P12111 DEFB109B-201ENST00000382656 264 ntBASIC2□□□□□ -2.09
COL6A3P12111 AC002524.1-201ENST00000411687 547 ntBASIC2□□□□□ -2.09
COL6A3P12111 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2□□□□□ -2.09
COL6A3P12111 HMGB1P41-201ENST00000520234 440 ntBASIC2□□□□□ -2.09
COL6A3P12111 AL121821.2-201ENST00000556081 394 ntBASIC2□□□□□ -2.09
COL6A3P12111 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC2□□□□□ -2.09
COL6A3P12111 HSPD1P16-201ENST00000402302 394 ntBASIC2□□□□□ -2.09
COL6A3P12111 AL161670.1-201ENST00000554348 137 ntBASIC2□□□□□ -2.09
COL6A3P12111 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2□□□□□ -2.09
COL6A3P12111 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2□□□□□ -2.09
COL6A3P12111 Y_RNA.783-201ENST00000613546 102 ntBASIC2□□□□□ -2.09
COL6A3P12111 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
COL6A3P12111 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2□□□□□ -2.09
COL6A3P12111 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
COL6A3P12111 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC2□□□□□ -2.09
COL6A3P12111 SNORA31-201ENST00000362607 130 ntBASIC2□□□□□ -2.09
COL6A3P12111 RNA5SP129-201ENST00000410276 118 ntBASIC2□□□□□ -2.09
COL6A3P12111 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2□□□□□ -2.09
COL6A3P12111 IGHV3-76-201ENST00000522465 295 ntBASIC2□□□□□ -2.09
COL6A3P12111 AP001207.1-201ENST00000524051 481 ntBASIC2□□□□□ -2.09
COL6A3P12111 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC2□□□□□ -2.09
COL6A3P12111 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2□□□□□ -2.09
COL6A3P12111 AL133216.2-202ENST00000634512 349 ntBASIC2□□□□□ -2.09
COL6A3P12111 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 RNA5SP457-201ENST00000363657 124 ntBASIC1.99□□□□□ -2.09
COL6A3P12111 RNA5SP139-201ENST00000364340 117 ntBASIC1.99□□□□□ -2.09
COL6A3P12111 RNU1-93P-201ENST00000364704 169 ntBASIC1.99□□□□□ -2.09
COL6A3P12111 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC1.99□□□□□ -2.09
COL6A3P12111 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC1.99□□□□□ -2.09
COL6A3P12111 MIR6132-201ENST00000622083 109 ntBASIC1.99□□□□□ -2.09
COL6A3P12111 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL6A3P12111 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL6A3P12111 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.99□□□□□ -2.09
COL6A3P12111 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.99□□□□□ -2.09
COL6A3P12111 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL6A3P12111 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
COL6A3P12111 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
COL6A3P12111 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
COL6A3P12111 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.98□□□□□ -2.09
COL6A3P12111 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.98□□□□□ -2.09
COL6A3P12111 RPS29P1-201ENST00000465274 159 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 CBX3P4-201ENST00000538909 354 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AC068790.3-201ENST00000602988 553 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AC105429.2-201ENST00000610567 517 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AL353748.2-201ENST00000622148 471 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.98□□□□□ -2.09
COL6A3P12111 AC084035.1-201ENST00000634543 607 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
COL6A3P12111 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC1.98□□□□□ -2.09
COL6A3P12111 TEX21P-201ENST00000447107 1476 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 MIR1294-201ENST00000408503 142 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AF131216.2-201ENST00000512316 564 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.98□□□□□ -2.09
COL6A3P12111 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC1.98□□□□□ -2.09
COL6A3P12111 CKAP2P1-201ENST00000555477 2049 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AL137100.2-201ENST00000555786 315 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.98□□□□□ -2.09
COL6A3P12111 MIR4421-201ENST00000578133 69 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 MIR98-201ENST00000606724 119 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
COL6A3P12111 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL6A3P12111 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL6A3P12111 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
COL6A3P12111 GSTA12P-201ENST00000402398 508 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC1.98□□□□□ -2.09
COL6A3P12111 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
COL6A3P12111 AC108078.1-201ENST00000508073 725 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC1.98□□□□□ -2.09
COL6A3P12111 BX664608.1-201ENST00000610519 487 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 LRRC77P-213ENST00000637727 880 ntBASIC1.98□□□□□ -2.09
COL6A3P12111 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL6A3P12111 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL6A3P12111 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
COL6A3P12111 SNORA48.3-201ENST00000391081 134 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.97□□□□□ -2.09
COL6A3P12111 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.97□□□□□ -2.09
COL6A3P12111 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.97□□□□□ -2.09
COL6A3P12111 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
COL6A3P12111 AC098848.2-201ENST00000588023 330 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.97□□□□□ -2.09
COL6A3P12111 AC243773.3-201ENST00000613270 256 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.97□□□□□ -2.09
COL6A3P12111 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms