Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.47□□□□□ -1.69
COL3A1P02461 RPL21P32-201ENST00000419877 477 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 MTCYBP24-201ENST00000420387 1106 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.47□□□□□ -1.69
COL3A1P02461 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.47□□□□□ -1.69
COL3A1P02461 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 BX510359.1-201ENST00000456973 237 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 RPL21P10-201ENST00000463521 490 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC091951.2-201ENST00000500762 203 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC117522.3-201ENST00000507974 584 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 PHBP14-201ENST00000512887 367 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 AC022483.1-201ENST00000514020 567 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.47□□□□□ -1.69
COL3A1P02461 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.47□□□□□ -1.69
COL3A1P02461 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.47□□□□□ -1.69
COL3A1P02461 OR4K7P-201ENST00000580232 945 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.47□□□□□ -1.69
COL3A1P02461 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC012493.2-201ENST00000595083 291 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 MTCO2P22-201ENST00000603246 681 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 BNIP3P9-201ENST00000603714 553 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 AC011374.2-201ENST00000607135 526 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 SNORD39.4-201ENST00000620099 78 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC024614.3-201ENST00000637860 256 ntBASIC4.47□□□□□ -1.69
COL3A1P02461 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL3A1P02461 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
COL3A1P02461 AC005332.5-201ENST00000591222 2919 ntBASIC4.46□□□□□ -1.69
COL3A1P02461 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
COL3A1P02461 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.69
COL3A1P02461 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL3A1P02461 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 AC138393.1-206ENST00000540997 1886 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 RNA5SP80-201ENST00000410475 111 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.46□□□□□ -1.7
COL3A1P02461 FO393419.3-201ENST00000428741 282 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.46□□□□□ -1.7
COL3A1P02461 AL353705.1-201ENST00000433468 480 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 MTND1P28-201ENST00000435623 950 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AL512286.1-201ENST00000439244 400 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AC023512.1-201ENST00000444513 499 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.46□□□□□ -1.7
COL3A1P02461 MTCO3P20-201ENST00000454926 688 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.46□□□□□ -1.7
COL3A1P02461 RPL5P24-201ENST00000463742 885 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 MTND1P16-201ENST00000465177 898 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.46□□□□□ -1.7
COL3A1P02461 AC023632.1-201ENST00000518463 375 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.46□□□□□ -1.7
COL3A1P02461 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.46□□□□□ -1.7
COL3A1P02461 ATP5F1P7-201ENST00000567330 760 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 MIR3124-201ENST00000582636 67 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.46□□□□□ -1.7
COL3A1P02461 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.46□□□□□ -1.7
COL3A1P02461 AC055876.5-201ENST00000605667 259 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 AP000238.1-201ENST00000608759 426 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 FER-210ENST00000628534 558 ntTSL 5 BASIC4.46□□□□□ -1.7
COL3A1P02461 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.46□□□□□ -1.7
COL3A1P02461 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
COL3A1P02461 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.46□□□□□ -1.7
COL3A1P02461 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 TNPO1P3-201ENST00000436471 2662 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.46□□□□□ -1.7
COL3A1P02461 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
COL3A1P02461 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL3A1P02461 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
COL3A1P02461 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL3A1P02461 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
COL3A1P02461 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 RNU6-707P-201ENST00000364647 95 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 Y_RNA.311-201ENST00000365068 96 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 Y_RNA.535-201ENST00000384612 99 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 MT-TL1-201ENST00000386347 75 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL3A1P02461 RNU6-876P-201ENST00000391295 104 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 FCF1P10-201ENST00000407590 479 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.45□□□□□ -1.7
COL3A1P02461 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.45□□□□□ -1.7
COL3A1P02461 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms