Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AC002076.2-201ENST00000617362 122 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AC007275.1-201ENST00000621243 671 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AL353748.2-201ENST00000622148 471 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.31□□□□□ -1.88
CLDN3O15551 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLDN3O15551 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CLDN3O15551 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CLDN3O15551 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.3□□□□□ -1.88
CLDN3O15551 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CLDN3O15551 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CLDN3O15551 SNORA46-201ENST00000384762 135 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 RPL21P3-201ENST00000395517 478 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.3□□□□□ -1.88
CLDN3O15551 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 MTCO1P39-201ENST00000426148 480 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 DPPA2P1-201ENST00000428060 556 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.3□□□□□ -1.88
CLDN3O15551 AC146507.2-201ENST00000460608 476 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 RN7SL75P-201ENST00000461926 281 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 RN7SL20P-201ENST00000488827 297 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.3□□□□□ -1.88
CLDN3O15551 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.3□□□□□ -1.88
CLDN3O15551 MTND4LP22-201ENST00000508209 276 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 RNU6-1028P-201ENST00000517164 93 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 RNU6-1261P-201ENST00000517194 104 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.3□□□□□ -1.88
CLDN3O15551 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.3□□□□□ -1.88
CLDN3O15551 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.3□□□□□ -1.88
CLDN3O15551 AL451074.6-201ENST00000608512 729 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 RNU6-1192P-201ENST00000612197 107 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 RNU6-489P-201ENST00000618289 107 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 AC006111.3-201ENST00000622137 383 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 MKKS-204ENST00000639674 192 ntBASIC3.3□□□□□ -1.88
CLDN3O15551 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.3□□□□□ -1.88
CLDN3O15551 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CLDN3O15551 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLDN3O15551 AC103988.1-201ENST00000566382 2177 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.29□□□□□ -1.88
CLDN3O15551 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.29□□□□□ -1.88
CLDN3O15551 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLDN3O15551 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CLDN3O15551 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLDN3O15551 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLDN3O15551 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CLDN3O15551 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CLDN3O15551 RNU1-140P-201ENST00000365040 165 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 RNA5SP274-201ENST00000410484 108 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 LUZP4P1-201ENST00000415420 344 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AC245054.2-201ENST00000415639 319 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.29□□□□□ -1.88
CLDN3O15551 RPL35AP12-201ENST00000425362 338 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.29□□□□□ -1.88
CLDN3O15551 RSL24D1P3-201ENST00000449255 495 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.29□□□□□ -1.88
CLDN3O15551 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.29□□□□□ -1.88
CLDN3O15551 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.29□□□□□ -1.88
CLDN3O15551 Z82190.1-201ENST00000454534 490 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 RNA5SP310-201ENST00000459084 116 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AP002884.2-201ENST00000471647 395 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.29□□□□□ -1.88
CLDN3O15551 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.29□□□□□ -1.88
CLDN3O15551 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.29□□□□□ -1.88
CLDN3O15551 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLDN3O15551 DEFB130C-202ENST00000530001 230 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AC022080.3-201ENST00000544433 482 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 MED28P6-201ENST00000558776 231 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 MTCO3P24-201ENST00000572729 782 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.29□□□□□ -1.88
CLDN3O15551 AL022099.1-201ENST00000604551 712 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 ATP5A1P2-202ENST00000616464 443 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 CYCSP41-201ENST00000616920 296 ntBASIC3.29□□□□□ -1.88
CLDN3O15551 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.29□□□□□ -1.88
CLDN3O15551 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.29□□□□□ -1.88
CLDN3O15551 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.29□□□□□ -1.88
CLDN3O15551 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLDN3O15551 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.29□□□□□ -1.88
CLDN3O15551 AC093831.2-201ENST00000624393 3427 ntBASIC3.28□□□□□ -1.88
CLDN3O15551 AC000403.1-201ENST00000613696 3585 ntBASIC3.28□□□□□ -1.88
CLDN3O15551 GNG5P1-201ENST00000255500 204 ntBASIC3.28□□□□□ -1.88
CLDN3O15551 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.28□□□□□ -1.88
CLDN3O15551 AC073325.2-201ENST00000339545 159 ntBASIC3.28□□□□□ -1.88
CLDN3O15551 RNU2-47P-201ENST00000410649 186 ntBASIC3.28□□□□□ -1.88
CLDN3O15551 RNU2-42P-201ENST00000410697 113 ntBASIC3.28□□□□□ -1.88
CLDN3O15551 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms