Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 RN7SKP115-201ENST00000363177 317 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.478-201ENST00000384358 107 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.577-201ENST00000384794 101 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 PPIAP9-201ENST00000403866 498 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 RPS15AP40-201ENST00000419621 391 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 RNU7-138P-201ENST00000459479 64 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 OR2AO1P-201ENST00000476497 403 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 SCARNA20.4-201ENST00000516969 131 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC069113.1-201ENST00000517763 267 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 HMGB1P40-201ENST00000525121 540 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 CR383656.7-201ENST00000548164 174 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC025423.5-201ENST00000550230 219 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 RN7SL356P-201ENST00000582228 248 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC078899.3-201ENST00000599065 212 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AL158032.1-201ENST00000605401 106 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC103858.2-201ENST00000621471 543 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 uc_338.7-201ENST00000621834 124 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AC010615.1-201ENST00000594254 1764 ntBASIC5.67□□□□□ -1.5
USP3Q9Y6I4 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
USP3Q9Y6I4 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC140134.1-201ENST00000511830 3544 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC092681.1-201ENST00000297369 291 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 SNORA20.1-201ENST00000364790 130 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.314-201ENST00000365114 102 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RN7SKP186-201ENST00000365371 303 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RNU6-596P-201ENST00000365395 98 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RNU6-339P-201ENST00000384310 107 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RNA5SP487-201ENST00000410186 122 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 CEACAMP1-201ENST00000434624 1035 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 REG1CP-206ENST00000447469 496 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC133473.1-201ENST00000455173 299 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AP000926.1-201ENST00000479573 241 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RPL17P19-201ENST00000489069 552 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RN7SL629P-201ENST00000489622 285 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RPL7P23-201ENST00000493874 747 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 RNU6-677P-201ENST00000516914 101 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 MIR1269B-201ENST00000580405 75 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC104763.2-201ENST00000604179 382 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC006329.2-201ENST00000611491 394 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 MIR4272-201ENST00000635924 64 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 MIR4275-201ENST00000636486 87 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 PABPC1P6-201ENST00000445594 1829 ntBASIC5.66□□□□□ -1.5
USP3Q9Y6I4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.66□□□□□ -1.5
USP3Q9Y6I4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC000374.1-201ENST00000434698 1745 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms