Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC008121.2-201ENST00000614647 523 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AL136313.1-201ENST00000624804 202 ntBASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC9Q9Y3X0 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 RNU6-50P-201ENST00000362356 103 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 RPL7P60-201ENST00000397636 735 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 COX5BP7-201ENST00000414780 274 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AL445584.1-201ENST00000431451 330 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC104850.1-201ENST00000435940 476 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 MTND1P34-201ENST00000438556 671 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC005094.1-201ENST00000440420 368 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 RPL26P6-201ENST00000440913 438 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 MTCO3P45-201ENST00000443036 613 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC068305.1-201ENST00000497406 726 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AL358832.1-201ENST00000497800 389 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 SNORA31.8-201ENST00000516327 108 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 MED28P6-201ENST00000558776 231 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC009063.1-201ENST00000563342 702 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AL391840.1-201ENST00000571144 367 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 MIR3690-201ENST00000580266 75 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 AL359740.1-201ENST00000624340 592 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 MAPK10-320ENST00000641462 6696 ntBASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC9Q9Y3X0 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC9Q9Y3X0 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC087190.4-201ENST00000574616 8334 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 RNU5A-1-201ENST00000362698 116 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 RNA5SP130-201ENST00000364431 114 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 SNORA20.2-201ENST00000383922 131 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC091390.3-201ENST00000426478 338 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 RPL31P35-201ENST00000431058 377 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 RPL23AP52-201ENST00000439311 478 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 MTCO3P20-201ENST00000454926 688 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 RPS27AP17-201ENST00000463344 455 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 RBM43P1-201ENST00000476891 1081 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC092451.1-201ENST00000480211 153 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC010460.1-201ENST00000507087 466 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC008958.1-201ENST00000511047 682 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 GMPSP1-201ENST00000514075 579 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 MTCYBP20-201ENST00000524239 1129 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC022880.1-201ENST00000534017 973 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC123904.3-201ENST00000547218 814 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 ZNF415P1-201ENST00000582279 1166 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC007687.1-201ENST00000602704 304 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC140479.6-201ENST00000633535 357 ntBASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC9Q9Y3X0 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 DEFB108F-201ENST00000344638 222 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 MIR449B-201ENST00000384995 97 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms