Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 U3.3-201ENST00000362986 216 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 RNA5SP455-201ENST00000365190 119 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 RNU5E-6P-201ENST00000365574 115 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 Y_RNA.404-201ENST00000383978 102 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 Y_RNA.496-201ENST00000384444 101 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 Y_RNA.512-201ENST00000384518 102 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 MIR1182-201ENST00000408363 97 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-1050P-201ENST00000410388 107 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 ATG3P1-201ENST00000419507 911 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AC236972.1-201ENST00000433225 199 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 RPL36AP6-201ENST00000435770 321 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 snoU13.1-201ENST00000459157 104 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 HMGB1P21-201ENST00000502313 581 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 IGKV1OR2-1-201ENST00000514060 354 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 RFPL4AP5-201ENST00000514977 504 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AP000827.1-201ENST00000527814 258 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AC018809.2-201ENST00000602436 3823 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 IGKV1OR2-118-201ENST00000603238 347 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AC104695.3-201ENST00000604052 296 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 AC004158.1-201ENST00000564508 4319 ntBASIC6.43□□□□□ -1.38
ZC3H4Q9UPT8 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC144833.1-201ENST00000567953 4089 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 SNORD1C-201ENST00000363315 78 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 Y_RNA.428-201ENST00000384078 102 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AL049697.2-201ENST00000403708 294 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-101P-201ENST00000410323 104 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 RNA5SP107-201ENST00000411358 122 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 BX682237.1-201ENST00000415016 335 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 SNORD121B-201ENST00000458838 81 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC097486.1-201ENST00000515331 210 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 Y_RNA.670-201ENST00000516255 105 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 RANP3-201ENST00000530970 276 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 RN7SL356P-201ENST00000582228 248 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 U2.17-201ENST00000611454 95 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 AC078938.1-201ENST00000620993 318 ntBASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.42□□□□□ -1.38
ZC3H4Q9UPT8 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 ASNSP1-201ENST00000518311 1939 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-490P-201ENST00000362985 107 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNU1-130P-201ENST00000363930 160 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-1243P-201ENST00000364028 107 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-1078P-201ENST00000364522 103 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-328P-201ENST00000390887 106 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 Y_RNA.594-201ENST00000410373 140 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNA5SP113-201ENST00000410486 84 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 MRPS21P2-201ENST00000424704 264 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 CRIP1P1-201ENST00000427567 185 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RHOT1P3-201ENST00000436571 331 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 AC104634.1-201ENST00000452720 462 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 HMGB3P30-201ENST00000457863 606 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 snoU13.7-201ENST00000459220 104 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 RNU6-470P-201ENST00000515954 104 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 SNORD116.3-201ENST00000517176 78 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 AC022790.1-201ENST00000522872 204 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 OR8R1P-201ENST00000543943 764 ntBASIC6.41□□□□□ -1.38
ZC3H4Q9UPT8 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms