Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CYCSP29-201ENST00000533731 318 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 OR8L1P-201ENST00000534005 955 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC091516.1-201ENST00000549191 703 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC107016.1-201ENST00000550463 337 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC009101.1-201ENST00000568135 242 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 HNRNPCP4-201ENST00000571636 900 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 MIR3913-1-201ENST00000577744 102 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC126118.1-201ENST00000607744 628 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC068944.2-201ENST00000610373 403 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC091304.9-201ENST00000612091 226 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 MIR486-1-201ENST00000612171 68 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC009159.1-201ENST00000618386 642 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AL445567.2-201ENST00000618935 498 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AP006248.2-201ENST00000623309 592 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC079597.1-201ENST00000624306 508 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC110994.2-201ENST00000635481 492 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC012020.1-201ENST00000624541 1728 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 MTCO1P24-201ENST00000515438 1558 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 RNY4P34-201ENST00000364779 95 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 SNORD51-201ENST00000384320 80 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 MIR181A1-201ENST00000385026 110 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 Z95327.1-201ENST00000446082 482 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AL500522.2-201ENST00000448562 343 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 snoU109.4-201ENST00000458953 143 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 RPL7P15-201ENST00000461190 712 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC021382.1-201ENST00000483523 359 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 MTND1P3-201ENST00000484956 952 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 BTF3L4P4-201ENST00000506381 449 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC109927.2-201ENST00000506416 303 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 HIGD1AP3-201ENST00000515857 278 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 RNU2-46P-201ENST00000517038 113 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 IGKV2D-36-201ENST00000518643 226 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AP003122.4-201ENST00000530980 758 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AL391840.1-201ENST00000571144 367 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 HMGN1P30-201ENST00000589286 268 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC004853.1-201ENST00000604902 698 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC121334.2-201ENST00000605387 271 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AP003117.2-201ENST00000606010 545 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC024941.1-201ENST00000612250 334 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AL592295.2-201ENST00000612578 206 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 MIR6798-201ENST00000612887 67 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC136475.10-201ENST00000620253 385 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 MIR6715B-201ENST00000637172 77 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 AC026951.1-201ENST00000559530 2459 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
LIMCH1Q9UPQ0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
LIMCH1Q9UPQ0 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.65□□□□□ -1.66
LIMCH1Q9UPQ0 AC093536.2-201ENST00000565257 1406 ntBASIC4.65□□□□□ -1.66
LIMCH1Q9UPQ0 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
LIMCH1Q9UPQ0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
LIMCH1Q9UPQ0 GNG5P1-201ENST00000255500 204 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 OR4G2P-201ENST00000328113 903 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 U8.3-201ENST00000363321 132 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms