Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNA5SP44-201ENST00000410446 133 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 BX323014.1-201ENST00000412876 237 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 Z99755.1-201ENST00000414048 380 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC127526.1-201ENST00000417526 366 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC099677.1-201ENST00000420575 175 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AL049610.1-201ENST00000423374 372 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 PSMA6P3-201ENST00000428242 164 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC005297.2-201ENST00000450430 606 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 ANKRD26P4-201ENST00000455755 950 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 RPS4XP2-201ENST00000458402 793 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 HMGB1P25-201ENST00000468402 607 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 RN7SL330P-201ENST00000469709 307 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC090453.1-201ENST00000495560 436 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 LRRC34P1-201ENST00000542742 915 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 NCAPGP2-201ENST00000557911 754 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 BNIP3P11-201ENST00000603878 563 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AL592221.1-201ENST00000605266 382 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC084757.4-201ENST00000616350 526 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC092628.2-201ENST00000622492 339 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AC091925.2-201ENST00000625059 256 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 AL513302.2-201ENST00000562313 1842 ntBASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.69□□□□□ -1.82
CPSF3Q9UKF6 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC138915.3-201ENST00000562908 1389 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 RNU6-50P-201ENST00000362356 103 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 DEFB109C-201ENST00000382575 264 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 DEFB109B-201ENST00000382656 264 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 RNU4-65P-201ENST00000410473 140 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 ARF4P2-201ENST00000430209 526 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL158071.1-201ENST00000430315 461 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL590103.1-201ENST00000434488 307 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 HMGB3P8-201ENST00000449709 577 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 PRSS3P4-201ENST00000453323 162 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 HMGB1P15-201ENST00000453854 435 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 snoU13.4-201ENST00000458916 104 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC097493.1-201ENST00000463958 372 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC112198.1-201ENST00000505369 1220 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 RNU1-61P-201ENST00000516107 151 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC105185.1-201ENST00000518705 535 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 HSPA8P13-201ENST00000523715 472 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC005476.1-201ENST00000554427 397 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 VN1R82P-201ENST00000601481 356 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC112220.3-201ENST00000605502 502 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AC231657.1-201ENST00000624313 397 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL136164.4-201ENST00000625013 2135 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 AL079343.1-201ENST00000572358 1771 ntBASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CPSF3Q9UKF6 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 RNA5SP72-201ENST00000364442 117 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 RNU6-878P-201ENST00000384578 110 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 MTCYBP38-201ENST00000417160 1123 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.67□□□□□ -1.82
CPSF3Q9UKF6 MTND4P6-201ENST00000438297 472 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms