Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SNX18P1Y-201ENST00000616231 511 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AP006248.2-201ENST00000623309 592 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC022893.2-201ENST00000564832 3296 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 AC027287.1-201ENST00000553115 1453 ntBASIC4.47□□□□□ -1.69
TDP1Q9NUW8 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
TDP1Q9NUW8 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
TDP1Q9NUW8 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
TDP1Q9NUW8 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
TDP1Q9NUW8 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 Y_RNA.390-201ENST00000383932 102 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 MIR19A-201ENST00000384878 82 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RPL7P60-201ENST00000397636 735 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RNU2-47P-201ENST00000410649 186 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RNU6-628P-201ENST00000410675 107 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 COX6B1P7-201ENST00000430845 235 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL662791.1-201ENST00000441992 928 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RAC1P7-201ENST00000445367 377 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL031584.1-201ENST00000447169 754 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RPL23AP81-201ENST00000455252 467 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 MTCO2P29-201ENST00000465212 189 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC023194.1-201ENST00000493084 308 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC099522.1-202ENST00000514718 367 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RNA5SP360-201ENST00000516555 118 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 Y_RNA.704-201ENST00000516851 102 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RNA5SP337-201ENST00000517007 109 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RNU6-1220P-201ENST00000517126 108 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 SUB1P2-201ENST00000556401 297 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 MIR1254-2-201ENST00000579553 63 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 MIR548S-201ENST00000581352 82 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AP000907.4-201ENST00000604143 237 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC011451.2-201ENST00000604303 598 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL160290.3-201ENST00000604869 165 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC008277.2-201ENST00000605196 797 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 Z98200.1-201ENST00000607298 470 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC017083.3-201ENST00000609955 700 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL356585.4-201ENST00000623078 1229 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL445363.3-201ENST00000623080 671 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC139792.3-201ENST00000623525 224 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AC007546.2-201ENST00000623996 360 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AL133243.3-201ENST00000617415 3004 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TDP1Q9NUW8 MAPK10-303ENST00000641324 3959 ntBASIC4.46□□□□□ -1.7
TDP1Q9NUW8 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 OR52B1P-201ENST00000316506 909 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 RNU6-1085P-201ENST00000363576 107 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 Y_RNA.159-201ENST00000363674 87 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 PPIAP31-201ENST00000405422 495 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC092447.6-201ENST00000414578 210 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 HMGB3P20-201ENST00000417997 600 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AL391219.1-201ENST00000422570 483 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 CKS1BP5-201ENST00000434172 273 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 TIMM9P1-201ENST00000436122 256 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.45□□□□□ -1.7
TDP1Q9NUW8 NFU1P2-201ENST00000448700 469 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 RPL5P30-201ENST00000465511 891 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 ST13P14-201ENST00000474095 734 ntBASIC4.45□□□□□ -1.7
TDP1Q9NUW8 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms